Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC15.1■□□□□ 0.01
MSX1P28360 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MSX1P28360 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.1■□□□□ 0.01
MSX1P28360 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.1■□□□□ 0.01
MSX1P28360 RARRES2P8-201ENST00000566335 367 ntBASIC15.1■□□□□ 0.01
MSX1P28360 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.1■□□□□ 0.01
MSX1P28360 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MSX1P28360 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
MSX1P28360 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MSX1P28360 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX1P28360 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX1P28360 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX1P28360 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX1P28360 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.1■□□□□ 0.01
MSX1P28360 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX1P28360 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MSX1P28360 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.1■□□□□ 0.01
MSX1P28360 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
MSX1P28360 AC009053.2-201ENST00000563701 2365 ntBASIC15.1■□□□□ 0.01
MSX1P28360 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MSX1P28360 AL391005.1-201ENST00000623953 2435 ntBASIC15.09■□□□□ 0.01
MSX1P28360 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.09■□□□□ 0.01
MSX1P28360 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.09■□□□□ 0.01
MSX1P28360 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC15.09■□□□□ 0.01
MSX1P28360 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX1P28360 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.09■□□□□ 0.01
MSX1P28360 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.09■□□□□ 0.01
MSX1P28360 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX1P28360 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.09■□□□□ 0.01
MSX1P28360 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
MSX1P28360 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX1P28360 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
MSX1P28360 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.09■□□□□ 0.01
MSX1P28360 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.09■□□□□ 0.01
MSX1P28360 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.09■□□□□ 0.01
MSX1P28360 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX1P28360 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.09■□□□□ 0.01
MSX1P28360 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.09■□□□□ 0.01
MSX1P28360 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
MSX1P28360 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.09■□□□□ 0.01
MSX1P28360 LHX6-205ENST00000464484 666 ntTSL 2 BASIC15.09■□□□□ 0.01
MSX1P28360 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.09■□□□□ 0.01
MSX1P28360 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.09■□□□□ 0.01
MSX1P28360 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.09■□□□□ 0.01
MSX1P28360 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.09■□□□□ 0.01
MSX1P28360 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
MSX1P28360 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.09■□□□□ 0.01
MSX1P28360 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.09■□□□□ 0.01
MSX1P28360 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX1P28360 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
MSX1P28360 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.09■□□□□ 0.01
MSX1P28360 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX1P28360 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.09■□□□□ 0.01
MSX1P28360 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX1P28360 PCGF3-213ENST00000620529 1899 ntBASIC15.09■□□□□ 0.01
MSX1P28360 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
MSX1P28360 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX1P28360 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX1P28360 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
MSX1P28360 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.09■□□□□ 0.01
MSX1P28360 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
MSX1P28360 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX1P28360 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC15.09■□□□□ 0.01
MSX1P28360 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.09■□□□□ 0.01
MSX1P28360 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX1P28360 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.09■□□□□ 0.01
MSX1P28360 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX1P28360 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.09■□□□□ 0.01
MSX1P28360 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX1P28360 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSX1P28360 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
MSX1P28360 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.08■□□□□ 0.01
MSX1P28360 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0.01
MSX1P28360 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
MSX1P28360 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC15.08■□□□□ 0.01
MSX1P28360 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
MSX1P28360 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
MSX1P28360 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.08■□□□□ 0.01
MSX1P28360 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSX1P28360 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSX1P28360 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.08■□□□□ 0
MSX1P28360 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.08■□□□□ 0
MSX1P28360 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.08■□□□□ 0
MSX1P28360 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
MSX1P28360 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSX1P28360 TNRC18P3-201ENST00000441896 2691 ntBASIC15.08■□□□□ 0
MSX1P28360 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.08■□□□□ 0
MSX1P28360 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC15.08■□□□□ 0
MSX1P28360 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
MSX1P28360 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSX1P28360 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
MSX1P28360 AL671277.1-201ENST00000429656 993 ntBASIC15.08■□□□□ 0
MSX1P28360 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.08■□□□□ 0
MSX1P28360 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.08■□□□□ 0
MSX1P28360 POU5F1P6-201ENST00000466990 990 ntBASIC15.08■□□□□ 0
MSX1P28360 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
MSX1P28360 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC15.08■□□□□ 0
MSX1P28360 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.08■□□□□ 0
MSX1P28360 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.08■□□□□ 0
MSX1P28360 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms