Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC126915.1-201ENST00000522847 1038 ntBASIC12.54□□□□□ -0.4
COL6A5A8TX70 DIO1-215ENST00000610607 796 ntTSL 5 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC12.54□□□□□ -0.4
COL6A5A8TX70 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 FOS-202ENST00000535987 1402 ntTSL 2 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 AC012618.1-201ENST00000461223 412 ntBASIC12.53□□□□□ -0.4
COL6A5A8TX70 NSD1-211ENST00000511258 809 ntTSL 3 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 AZGP1P1-201ENST00000411909 902 ntBASIC12.53□□□□□ -0.4
COL6A5A8TX70 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 AC025279.2-201ENST00000569730 653 ntBASIC12.53□□□□□ -0.4
COL6A5A8TX70 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 TBCB-211ENST00000589996 724 ntTSL 3 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 LINC01115-203ENST00000606068 577 ntBASIC12.53□□□□□ -0.4
COL6A5A8TX70 AF254983.2-201ENST00000612331 135 ntBASIC12.53□□□□□ -0.4
COL6A5A8TX70 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC12.53□□□□□ -0.4
COL6A5A8TX70 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL6A5A8TX70 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
COL6A5A8TX70 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL6A5A8TX70 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC12.52□□□□□ -0.4
COL6A5A8TX70 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC12.52□□□□□ -0.4
COL6A5A8TX70 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL6A5A8TX70 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL6A5A8TX70 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC12.52□□□□□ -0.4
COL6A5A8TX70 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
COL6A5A8TX70 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC12.52□□□□□ -0.4
COL6A5A8TX70 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC12.52□□□□□ -0.4
COL6A5A8TX70 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
COL6A5A8TX70 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
COL6A5A8TX70 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
COL6A5A8TX70 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC12.52□□□□□ -0.4
COL6A5A8TX70 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC12.52□□□□□ -0.4
COL6A5A8TX70 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
COL6A5A8TX70 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC12.52□□□□□ -0.4
COL6A5A8TX70 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
COL6A5A8TX70 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC12.52□□□□□ -0.4
COL6A5A8TX70 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC12.52□□□□□ -0.4
COL6A5A8TX70 AL451050.2-201ENST00000606967 682 ntBASIC12.52□□□□□ -0.4
COL6A5A8TX70 AP003392.6-201ENST00000607709 325 ntBASIC12.52□□□□□ -0.4
COL6A5A8TX70 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL6A5A8TX70 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL6A5A8TX70 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
COL6A5A8TX70 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
COL6A5A8TX70 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
COL6A5A8TX70 REXO1L8P-201ENST00000604378 1897 ntBASIC12.52□□□□□ -0.41
COL6A5A8TX70 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
COL6A5A8TX70 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC12.52□□□□□ -0.41
COL6A5A8TX70 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL6A5A8TX70 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC12.52□□□□□ -0.41
COL6A5A8TX70 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
COL6A5A8TX70 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC12.52□□□□□ -0.41
COL6A5A8TX70 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
COL6A5A8TX70 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL6A5A8TX70 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC12.52□□□□□ -0.41
COL6A5A8TX70 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL6A5A8TX70 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms