Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CISHQ9NSE2 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CISHQ9NSE2 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CISHQ9NSE2 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CISHQ9NSE2 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CISHQ9NSE2 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CISHQ9NSE2 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CISHQ9NSE2 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CISHQ9NSE2 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CISHQ9NSE2 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CISHQ9NSE2 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CISHQ9NSE2 AC211486.1-202ENST00000416371 468 ntBASIC17.55■□□□□ 0.4
CISHQ9NSE2 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 AC211476.1-201ENST00000503899 468 ntBASIC17.55■□□□□ 0.4
CISHQ9NSE2 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 LINC01225-203ENST00000563550 1244 ntBASIC17.55■□□□□ 0.4
CISHQ9NSE2 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 AC073389.1-201ENST00000595595 795 ntBASIC17.55■□□□□ 0.4
CISHQ9NSE2 AC022145.2-201ENST00000598203 171 ntBASIC17.55■□□□□ 0.4
CISHQ9NSE2 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 AC055717.3-201ENST00000622967 595 ntBASIC17.55■□□□□ 0.4
CISHQ9NSE2 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CISHQ9NSE2 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CISHQ9NSE2 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CISHQ9NSE2 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.55■□□□□ 0.4
CISHQ9NSE2 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CISHQ9NSE2 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CISHQ9NSE2 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CISHQ9NSE2 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CISHQ9NSE2 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CISHQ9NSE2 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CISHQ9NSE2 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CISHQ9NSE2 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CISHQ9NSE2 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CISHQ9NSE2 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CISHQ9NSE2 AL513210.1-201ENST00000629608 234 ntBASIC17.54■□□□□ 0.4
CISHQ9NSE2 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CISHQ9NSE2 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CISHQ9NSE2 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CISHQ9NSE2 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CISHQ9NSE2 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CISHQ9NSE2 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CISHQ9NSE2 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.54■□□□□ 0.4
CISHQ9NSE2 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CISHQ9NSE2 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.53■□□□□ 0.4
CISHQ9NSE2 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.53■□□□□ 0.4
CISHQ9NSE2 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CISHQ9NSE2 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CISHQ9NSE2 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CISHQ9NSE2 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CISHQ9NSE2 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CISHQ9NSE2 U82695.1-201ENST00000635752 1889 ntBASIC17.53■□□□□ 0.4
CISHQ9NSE2 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CISHQ9NSE2 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CISHQ9NSE2 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CISHQ9NSE2 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CISHQ9NSE2 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.53■□□□□ 0.4
CISHQ9NSE2 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CISHQ9NSE2 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.53■□□□□ 0.4
CISHQ9NSE2 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CISHQ9NSE2 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.53■□□□□ 0.4
CISHQ9NSE2 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms