Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 MTHFR-217ENST00000641820 1569 ntBASIC19.1■□□□□ 0.65
SF3A1Q15459 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC19.1■□□□□ 0.65
SF3A1Q15459 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SF3A1Q15459 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SF3A1Q15459 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.1■□□□□ 0.65
SF3A1Q15459 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
SF3A1Q15459 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SF3A1Q15459 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SF3A1Q15459 CYP51A1P2-201ENST00000419457 1499 ntBASIC19.1■□□□□ 0.65
SF3A1Q15459 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SF3A1Q15459 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SF3A1Q15459 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SF3A1Q15459 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
SF3A1Q15459 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SF3A1Q15459 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SF3A1Q15459 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
SF3A1Q15459 AC129492.6-201ENST00000611383 1305 ntBASIC19.1■□□□□ 0.65
SF3A1Q15459 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.1■□□□□ 0.65
SF3A1Q15459 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SF3A1Q15459 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SF3A1Q15459 AL031008.1-201ENST00000619963 541 ntBASIC19.1■□□□□ 0.65
SF3A1Q15459 FAM215A-202ENST00000632077 792 ntBASIC19.1■□□□□ 0.65
SF3A1Q15459 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC19.1■□□□□ 0.65
SF3A1Q15459 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SF3A1Q15459 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SF3A1Q15459 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC19.1■□□□□ 0.65
SF3A1Q15459 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SF3A1Q15459 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC19.1■□□□□ 0.65
SF3A1Q15459 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SF3A1Q15459 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC19.1■□□□□ 0.65
SF3A1Q15459 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SF3A1Q15459 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
SF3A1Q15459 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SF3A1Q15459 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SF3A1Q15459 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SF3A1Q15459 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SF3A1Q15459 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SF3A1Q15459 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC19.09■□□□□ 0.65
SF3A1Q15459 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC19.09■□□□□ 0.65
SF3A1Q15459 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SF3A1Q15459 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
SF3A1Q15459 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SF3A1Q15459 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SF3A1Q15459 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SF3A1Q15459 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SF3A1Q15459 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
SF3A1Q15459 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC19.09■□□□□ 0.65
SF3A1Q15459 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SF3A1Q15459 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SF3A1Q15459 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC19.09■□□□□ 0.65
SF3A1Q15459 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SF3A1Q15459 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SF3A1Q15459 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SF3A1Q15459 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SF3A1Q15459 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SF3A1Q15459 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC19.09■□□□□ 0.65
SF3A1Q15459 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.09■□□□□ 0.65
SF3A1Q15459 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SF3A1Q15459 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.09■□□□□ 0.65
SF3A1Q15459 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC19.09■□□□□ 0.65
SF3A1Q15459 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.09■□□□□ 0.65
SF3A1Q15459 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC19.09■□□□□ 0.65
SF3A1Q15459 OR7E47P-204ENST00000575924 449 ntBASIC19.09■□□□□ 0.65
SF3A1Q15459 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.09■□□□□ 0.65
SF3A1Q15459 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC19.09■□□□□ 0.65
SF3A1Q15459 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SF3A1Q15459 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SF3A1Q15459 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC19.09■□□□□ 0.65
SF3A1Q15459 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC19.09■□□□□ 0.65
SF3A1Q15459 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SF3A1Q15459 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SF3A1Q15459 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SF3A1Q15459 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SF3A1Q15459 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
SF3A1Q15459 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SF3A1Q15459 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.08■□□□□ 0.65
SF3A1Q15459 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SF3A1Q15459 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC19.08■□□□□ 0.65
SF3A1Q15459 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC19.08■□□□□ 0.65
SF3A1Q15459 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SF3A1Q15459 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SF3A1Q15459 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SF3A1Q15459 AC126755.1-201ENST00000525846 6405 ntBASIC19.08■□□□□ 0.65
SF3A1Q15459 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SF3A1Q15459 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SF3A1Q15459 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
SF3A1Q15459 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.08■□□□□ 0.64
SF3A1Q15459 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SF3A1Q15459 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SF3A1Q15459 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
SF3A1Q15459 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC19.08■□□□□ 0.64
SF3A1Q15459 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC19.08■□□□□ 0.64
SF3A1Q15459 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC19.08■□□□□ 0.64
SF3A1Q15459 AC005412.3-201ENST00000580309 715 ntBASIC19.08■□□□□ 0.64
SF3A1Q15459 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
SF3A1Q15459 CALM3-211ENST00000598871 561 ntTSL 4 BASIC19.08■□□□□ 0.64
SF3A1Q15459 AL049840.3-201ENST00000602669 611 ntBASIC19.08■□□□□ 0.64
SF3A1Q15459 AC004790.2-201ENST00000623588 572 ntBASIC19.08■□□□□ 0.64
SF3A1Q15459 AC005593.1-201ENST00000624894 515 ntBASIC19.08■□□□□ 0.64
SF3A1Q15459 AP001350.2-201ENST00000625104 1094 ntBASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms