Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC22.5■■□□□ 1.19
MSH6P52701 AC124283.3-201ENST00000570869 594 ntBASIC22.5■■□□□ 1.19
MSH6P52701 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC22.5■■□□□ 1.19
MSH6P52701 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC22.5■■□□□ 1.19
MSH6P52701 AL022328.3-201ENST00000607943 679 ntBASIC22.5■■□□□ 1.19
MSH6P52701 AC015967.2-201ENST00000624092 234 ntBASIC22.5■■□□□ 1.19
MSH6P52701 AC006435.4-201ENST00000625037 234 ntBASIC22.5■■□□□ 1.19
MSH6P52701 AL356737.1-201ENST00000634391 234 ntBASIC22.5■■□□□ 1.19
MSH6P52701 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
MSH6P52701 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
MSH6P52701 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
MSH6P52701 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
MSH6P52701 AC067852.2-201ENST00000590513 2313 ntBASIC22.5■■□□□ 1.19
MSH6P52701 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
MSH6P52701 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
MSH6P52701 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
MSH6P52701 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
MSH6P52701 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
MSH6P52701 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC22.5■■□□□ 1.19
MSH6P52701 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
MSH6P52701 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
MSH6P52701 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
MSH6P52701 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
MSH6P52701 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC22.5■■□□□ 1.19
MSH6P52701 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
MSH6P52701 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC22.5■■□□□ 1.19
MSH6P52701 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
MSH6P52701 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC22.5■■□□□ 1.19
MSH6P52701 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
MSH6P52701 TPO-206ENST00000382269 1155 ntTSL 5 BASIC22.5■■□□□ 1.19
MSH6P52701 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC22.5■■□□□ 1.19
MSH6P52701 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC22.5■■□□□ 1.19
MSH6P52701 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC22.5■■□□□ 1.19
MSH6P52701 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC22.5■■□□□ 1.19
MSH6P52701 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC22.5■■□□□ 1.19
MSH6P52701 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC22.5■■□□□ 1.19
MSH6P52701 RHOXF1P1-202ENST00000635473 501 ntBASIC22.5■■□□□ 1.19
MSH6P52701 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
MSH6P52701 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH6P52701 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
MSH6P52701 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC22.49■■□□□ 1.19
MSH6P52701 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC22.49■■□□□ 1.19
MSH6P52701 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC22.49■■□□□ 1.19
MSH6P52701 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH6P52701 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH6P52701 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH6P52701 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC22.49■■□□□ 1.19
MSH6P52701 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH6P52701 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
MSH6P52701 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH6P52701 FXNP2-201ENST00000411625 547 ntBASIC22.49■■□□□ 1.19
MSH6P52701 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC22.49■■□□□ 1.19
MSH6P52701 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC22.49■■□□□ 1.19
MSH6P52701 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC22.49■■□□□ 1.19
MSH6P52701 ARTN-209ENST00000479128 471 ntTSL 3 BASIC22.49■■□□□ 1.19
MSH6P52701 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC22.49■■□□□ 1.19
MSH6P52701 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC22.49■■□□□ 1.19
MSH6P52701 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC22.49■■□□□ 1.19
MSH6P52701 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC22.49■■□□□ 1.19
MSH6P52701 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH6P52701 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
MSH6P52701 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
MSH6P52701 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH6P52701 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC22.49■■□□□ 1.19
MSH6P52701 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC22.49■■□□□ 1.19
MSH6P52701 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
MSH6P52701 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
MSH6P52701 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH6P52701 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
MSH6P52701 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH6P52701 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC22.48■■□□□ 1.19
MSH6P52701 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC22.48■■□□□ 1.19
MSH6P52701 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH6P52701 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC22.48■■□□□ 1.19
MSH6P52701 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH6P52701 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH6P52701 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC22.48■■□□□ 1.19
MSH6P52701 AC016694.1-201ENST00000434179 700 ntBASIC22.48■■□□□ 1.19
MSH6P52701 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC22.48■■□□□ 1.19
MSH6P52701 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
MSH6P52701 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC22.48■■□□□ 1.19
MSH6P52701 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC22.48■■□□□ 1.19
MSH6P52701 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC22.48■■□□□ 1.19
MSH6P52701 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC22.48■■□□□ 1.19
MSH6P52701 SNX1-214ENST00000625244 324 ntTSL 5 BASIC22.48■■□□□ 1.19
MSH6P52701 AC008687.7-202ENST00000637404 953 ntBASIC22.48■■□□□ 1.19
MSH6P52701 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH6P52701 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
MSH6P52701 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
MSH6P52701 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH6P52701 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH6P52701 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH6P52701 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH6P52701 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC22.47■■□□□ 1.19
MSH6P52701 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH6P52701 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
MSH6P52701 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH6P52701 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
MSH6P52701 SOCS2P1-201ENST00000417727 557 ntBASIC22.47■■□□□ 1.19
MSH6P52701 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC22.47■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms