Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A3P25940 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A3P25940 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC20.37■□□□□ 0.85
COL5A3P25940 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
COL5A3P25940 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A3P25940 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A3P25940 MGST3-203ENST00000367885 680 ntTSL 2 BASIC20.37■□□□□ 0.85
COL5A3P25940 AC004987.2-201ENST00000395959 1148 ntBASIC20.37■□□□□ 0.85
COL5A3P25940 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A3P25940 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC20.37■□□□□ 0.85
COL5A3P25940 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A3P25940 SLED1-202ENST00000512051 380 ntBASIC20.37■□□□□ 0.85
COL5A3P25940 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A3P25940 AC005915.1-201ENST00000624912 2018 ntBASIC20.37■□□□□ 0.85
COL5A3P25940 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A3P25940 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.37■□□□□ 0.85
COL5A3P25940 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A3P25940 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A3P25940 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A3P25940 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.36■□□□□ 0.85
COL5A3P25940 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL5A3P25940 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
COL5A3P25940 AC004945.1-201ENST00000416738 983 ntBASIC20.36■□□□□ 0.85
COL5A3P25940 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC20.36■□□□□ 0.85
COL5A3P25940 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL5A3P25940 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC20.36■□□□□ 0.85
COL5A3P25940 AP000812.2-201ENST00000538934 718 ntBASIC20.36■□□□□ 0.85
COL5A3P25940 RN7SL219P-201ENST00000582872 296 ntBASIC20.36■□□□□ 0.85
COL5A3P25940 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL5A3P25940 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
COL5A3P25940 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL5A3P25940 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL5A3P25940 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL5A3P25940 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL5A3P25940 TPO-206ENST00000382269 1155 ntTSL 5 BASIC20.36■□□□□ 0.85
COL5A3P25940 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC20.36■□□□□ 0.85
COL5A3P25940 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL5A3P25940 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC20.36■□□□□ 0.85
COL5A3P25940 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL5A3P25940 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL5A3P25940 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL5A3P25940 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC20.36■□□□□ 0.85
COL5A3P25940 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC20.36■□□□□ 0.85
COL5A3P25940 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC20.36■□□□□ 0.85
COL5A3P25940 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC20.36■□□□□ 0.85
COL5A3P25940 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC20.36■□□□□ 0.85
COL5A3P25940 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC20.36■□□□□ 0.85
COL5A3P25940 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.36■□□□□ 0.85
COL5A3P25940 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL5A3P25940 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC20.36■□□□□ 0.85
COL5A3P25940 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC20.36■□□□□ 0.85
COL5A3P25940 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL5A3P25940 AC243960.2-201ENST00000600996 747 ntBASIC20.36■□□□□ 0.85
COL5A3P25940 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL5A3P25940 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL5A3P25940 GZMB-202ENST00000382540 816 ntTSL 5 BASIC20.35■□□□□ 0.85
COL5A3P25940 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL5A3P25940 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC20.35■□□□□ 0.85
COL5A3P25940 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC20.35■□□□□ 0.85
COL5A3P25940 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC20.35■□□□□ 0.85
COL5A3P25940 AC243562.2-201ENST00000561247 970 ntBASIC20.35■□□□□ 0.85
COL5A3P25940 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC20.35■□□□□ 0.85
COL5A3P25940 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL5A3P25940 PCDHB18P-201ENST00000524813 2368 ntBASIC20.35■□□□□ 0.85
COL5A3P25940 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
COL5A3P25940 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL5A3P25940 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL5A3P25940 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
COL5A3P25940 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL5A3P25940 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL5A3P25940 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A3P25940 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A3P25940 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A3P25940 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A3P25940 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A3P25940 AC139713.2-201ENST00000641328 2723 ntBASIC20.34■□□□□ 0.85
COL5A3P25940 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.34■□□□□ 0.85
COL5A3P25940 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A3P25940 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
COL5A3P25940 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A3P25940 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC20.34■□□□□ 0.85
COL5A3P25940 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A3P25940 AP001889.1-201ENST00000525414 633 ntBASIC20.34■□□□□ 0.85
COL5A3P25940 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC20.34■□□□□ 0.85
COL5A3P25940 EMC4-209ENST00000559421 497 ntTSL 2 BASIC20.34■□□□□ 0.85
COL5A3P25940 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A3P25940 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC20.34■□□□□ 0.85
COL5A3P25940 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A3P25940 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC20.34■□□□□ 0.85
COL5A3P25940 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A3P25940 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A3P25940 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A3P25940 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL5A3P25940 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL5A3P25940 LINC01144-201ENST00000626198 1710 ntBASIC20.33■□□□□ 0.85
COL5A3P25940 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL5A3P25940 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL5A3P25940 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL5A3P25940 BRWD1P1-201ENST00000401091 371 ntBASIC20.33■□□□□ 0.85
COL5A3P25940 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms