Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1FO60840 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC20.47■□□□□ 0.87
CACNA1FO60840 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CACNA1FO60840 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1FO60840 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC20.47■□□□□ 0.87
CACNA1FO60840 BCRP1-201ENST00000444246 691 ntBASIC20.47■□□□□ 0.87
CACNA1FO60840 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1FO60840 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1FO60840 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC20.47■□□□□ 0.87
CACNA1FO60840 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1FO60840 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1FO60840 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1FO60840 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CACNA1FO60840 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1FO60840 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1FO60840 Z97205.2-201ENST00000564697 1639 ntBASIC20.47■□□□□ 0.87
CACNA1FO60840 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1FO60840 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1FO60840 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
CACNA1FO60840 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC20.47■□□□□ 0.87
CACNA1FO60840 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC20.47■□□□□ 0.87
CACNA1FO60840 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1FO60840 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1FO60840 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1FO60840 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CACNA1FO60840 MIR943-201ENST00000401286 94 ntBASIC20.46■□□□□ 0.87
CACNA1FO60840 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CACNA1FO60840 HNRNPA1P40-201ENST00000426371 1278 ntBASIC20.46■□□□□ 0.87
CACNA1FO60840 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC20.46■□□□□ 0.87
CACNA1FO60840 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC20.46■□□□□ 0.87
CACNA1FO60840 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CACNA1FO60840 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC20.46■□□□□ 0.87
CACNA1FO60840 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CACNA1FO60840 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CACNA1FO60840 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CACNA1FO60840 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CACNA1FO60840 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CACNA1FO60840 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC20.46■□□□□ 0.87
CACNA1FO60840 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CACNA1FO60840 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC20.46■□□□□ 0.87
CACNA1FO60840 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CACNA1FO60840 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC20.46■□□□□ 0.87
CACNA1FO60840 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CACNA1FO60840 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CACNA1FO60840 UGT1A2P-201ENST00000454886 866 ntBASIC20.46■□□□□ 0.87
CACNA1FO60840 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CACNA1FO60840 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC20.46■□□□□ 0.87
CACNA1FO60840 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC20.46■□□□□ 0.87
CACNA1FO60840 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC20.46■□□□□ 0.87
CACNA1FO60840 LRRFIP1P1-201ENST00000498774 2246 ntBASIC20.46■□□□□ 0.87
CACNA1FO60840 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC20.46■□□□□ 0.87
CACNA1FO60840 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
CACNA1FO60840 AC087499.5-201ENST00000452760 1342 ntBASIC20.46■□□□□ 0.87
CACNA1FO60840 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CACNA1FO60840 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC20.46■□□□□ 0.87
CACNA1FO60840 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CACNA1FO60840 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CACNA1FO60840 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1FO60840 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CACNA1FO60840 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1FO60840 FZD10-202ENST00000539839 3282 ntBASIC20.45■□□□□ 0.86
CACNA1FO60840 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1FO60840 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
CACNA1FO60840 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CACNA1FO60840 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1FO60840 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1FO60840 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1FO60840 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC20.45■□□□□ 0.86
CACNA1FO60840 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
CACNA1FO60840 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1FO60840 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1FO60840 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
CACNA1FO60840 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1FO60840 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC20.45■□□□□ 0.86
CACNA1FO60840 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1FO60840 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1FO60840 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC20.45■□□□□ 0.86
CACNA1FO60840 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1FO60840 AC124067.4-201ENST00000519691 2379 ntBASIC20.45■□□□□ 0.86
CACNA1FO60840 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC20.45■□□□□ 0.86
CACNA1FO60840 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC20.45■□□□□ 0.86
CACNA1FO60840 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1FO60840 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1FO60840 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1FO60840 HIST3H2BA-201ENST00000436555 524 ntBASIC20.45■□□□□ 0.86
CACNA1FO60840 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC20.45■□□□□ 0.86
CACNA1FO60840 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1FO60840 REEP4-207ENST00000523293 913 ntTSL 3 BASIC20.45■□□□□ 0.86
CACNA1FO60840 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1FO60840 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1FO60840 AC008761.3-201ENST00000624803 892 ntBASIC20.45■□□□□ 0.86
CACNA1FO60840 AL033527.5-202ENST00000641632 1098 ntBASIC20.45■□□□□ 0.86
CACNA1FO60840 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC20.44■□□□□ 0.86
CACNA1FO60840 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CACNA1FO60840 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CACNA1FO60840 TDG-209ENST00000544861 1387 ntTSL 2 BASIC20.44■□□□□ 0.86
CACNA1FO60840 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC20.44■□□□□ 0.86
CACNA1FO60840 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CACNA1FO60840 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CACNA1FO60840 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms