Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.57■□□□□ 0.4
SIX4Q9UIU6 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 AC061975.2-201ENST00000581722 295 ntBASIC17.57■□□□□ 0.4
SIX4Q9UIU6 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 AC025678.2-201ENST00000562061 970 ntBASIC17.56■□□□□ 0.4
SIX4Q9UIU6 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 AC015911.4-201ENST00000588022 1070 ntBASIC17.56■□□□□ 0.4
SIX4Q9UIU6 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
SIX4Q9UIU6 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 AL645939.2-201ENST00000427340 991 ntBASIC17.55■□□□□ 0.4
SIX4Q9UIU6 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 RNA5SP410-201ENST00000516285 106 ntBASIC17.55■□□□□ 0.4
SIX4Q9UIU6 RFPL4AP1-201ENST00000530883 850 ntBASIC17.55■□□□□ 0.4
SIX4Q9UIU6 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 MIR4453-201ENST00000584019 89 ntBASIC17.55■□□□□ 0.4
SIX4Q9UIU6 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 AC018529.1-201ENST00000613063 361 ntBASIC17.55■□□□□ 0.4
SIX4Q9UIU6 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 PCDH8P1-201ENST00000428983 2773 ntBASIC17.55■□□□□ 0.4
SIX4Q9UIU6 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX4Q9UIU6 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms