Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USP41Q3LFD5 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USP41Q3LFD5 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP41Q3LFD5 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP41Q3LFD5 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USP41Q3LFD5 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP41Q3LFD5 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USP41Q3LFD5 AL645728.1-201ENST00000366221 2101 ntBASIC17.5■□□□□ 0.39
USP41Q3LFD5 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.5■□□□□ 0.39
USP41Q3LFD5 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP41Q3LFD5 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 RPL37AP1-201ENST00000412502 279 ntBASIC17.49■□□□□ 0.39
USP41Q3LFD5 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 AC009477.1-201ENST00000452936 217 ntBASIC17.49■□□□□ 0.39
USP41Q3LFD5 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 BANF1P1-201ENST00000553684 263 ntBASIC17.49■□□□□ 0.39
USP41Q3LFD5 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 AC004233.3-201ENST00000607794 1269 ntBASIC17.49■□□□□ 0.39
USP41Q3LFD5 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 AC046158.3-201ENST00000624947 2558 ntBASIC17.49■□□□□ 0.39
USP41Q3LFD5 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.49■□□□□ 0.39
USP41Q3LFD5 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP41Q3LFD5 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.48■□□□□ 0.39
USP41Q3LFD5 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
USP41Q3LFD5 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.48■□□□□ 0.39
USP41Q3LFD5 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.48■□□□□ 0.39
USP41Q3LFD5 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.48■□□□□ 0.39
USP41Q3LFD5 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.48■□□□□ 0.39
USP41Q3LFD5 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.48■□□□□ 0.39
USP41Q3LFD5 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
USP41Q3LFD5 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
USP41Q3LFD5 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC17.48■□□□□ 0.39
USP41Q3LFD5 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 AC093724.1-201ENST00000448659 1027 ntBASIC17.48■□□□□ 0.39
USP41Q3LFD5 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
USP41Q3LFD5 REEP4-207ENST00000523293 913 ntTSL 3 BASIC17.48■□□□□ 0.39
USP41Q3LFD5 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP41Q3LFD5 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.48■□□□□ 0.39
USP41Q3LFD5 AC024267.1-201ENST00000582320 895 ntBASIC17.48■□□□□ 0.39
USP41Q3LFD5 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms