Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.69□□□□□ -0.06
MMP28Q9H239 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
MMP28Q9H239 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 AL353692.3-201ENST00000407031 1396 ntBASIC14.69□□□□□ -0.06
MMP28Q9H239 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC14.69□□□□□ -0.06
MMP28Q9H239 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.69□□□□□ -0.06
MMP28Q9H239 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
MMP28Q9H239 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.69□□□□□ -0.06
MMP28Q9H239 PRAL-201ENST00000624952 3286 ntBASIC14.68□□□□□ -0.06
MMP28Q9H239 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MMP28Q9H239 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MMP28Q9H239 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
MMP28Q9H239 AP005117.1-202ENST00000581724 1908 ntBASIC14.68□□□□□ -0.06
MMP28Q9H239 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC14.68□□□□□ -0.06
MMP28Q9H239 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC14.68□□□□□ -0.06
MMP28Q9H239 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MMP28Q9H239 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
MMP28Q9H239 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
MMP28Q9H239 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MMP28Q9H239 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MMP28Q9H239 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
MMP28Q9H239 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.68□□□□□ -0.06
MMP28Q9H239 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.68□□□□□ -0.06
MMP28Q9H239 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC14.68□□□□□ -0.06
MMP28Q9H239 Z83836.1-201ENST00000624605 1642 ntBASIC14.68□□□□□ -0.06
MMP28Q9H239 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MMP28Q9H239 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC14.68□□□□□ -0.06
MMP28Q9H239 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC14.68□□□□□ -0.06
MMP28Q9H239 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC14.68□□□□□ -0.06
MMP28Q9H239 KRT126P-201ENST00000549467 1181 ntBASIC14.68□□□□□ -0.06
MMP28Q9H239 AL121894.2-201ENST00000602977 491 ntBASIC14.68□□□□□ -0.06
MMP28Q9H239 AL390719.2-201ENST00000606993 987 ntBASIC14.68□□□□□ -0.06
MMP28Q9H239 AC009154.2-201ENST00000621177 724 ntBASIC14.68□□□□□ -0.06
MMP28Q9H239 ANKRD20A8P-203ENST00000641373 517 ntBASIC14.68□□□□□ -0.06
MMP28Q9H239 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
MMP28Q9H239 AC023157.3-201ENST00000619086 2088 ntBASIC14.68□□□□□ -0.06
MMP28Q9H239 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
MMP28Q9H239 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.68□□□□□ -0.06
MMP28Q9H239 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
MMP28Q9H239 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
MMP28Q9H239 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MMP28Q9H239 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
MMP28Q9H239 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MMP28Q9H239 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
MMP28Q9H239 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MMP28Q9H239 AC067930.6-201ENST00000623257 4947 ntBASIC14.68□□□□□ -0.06
MMP28Q9H239 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MMP28Q9H239 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC14.68□□□□□ -0.06
MMP28Q9H239 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MMP28Q9H239 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MMP28Q9H239 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MMP28Q9H239 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MMP28Q9H239 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MMP28Q9H239 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.67□□□□□ -0.06
MMP28Q9H239 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
MMP28Q9H239 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
MMP28Q9H239 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MMP28Q9H239 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MMP28Q9H239 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
MMP28Q9H239 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MMP28Q9H239 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
MMP28Q9H239 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.67□□□□□ -0.06
MMP28Q9H239 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC14.67□□□□□ -0.06
MMP28Q9H239 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
MMP28Q9H239 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
MMP28Q9H239 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
MMP28Q9H239 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC14.67□□□□□ -0.06
MMP28Q9H239 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC14.67□□□□□ -0.06
MMP28Q9H239 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC14.67□□□□□ -0.06
MMP28Q9H239 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
MMP28Q9H239 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
MMP28Q9H239 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
MMP28Q9H239 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC14.67□□□□□ -0.06
MMP28Q9H239 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC14.67□□□□□ -0.06
MMP28Q9H239 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
MMP28Q9H239 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC14.67□□□□□ -0.06
MMP28Q9H239 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC14.67□□□□□ -0.06
MMP28Q9H239 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC14.67□□□□□ -0.06
MMP28Q9H239 AC116407.4-201ENST00000623319 1061 ntBASIC14.67□□□□□ -0.06
MMP28Q9H239 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.67□□□□□ -0.06
MMP28Q9H239 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
MMP28Q9H239 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
MMP28Q9H239 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.67□□□□□ -0.06
MMP28Q9H239 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
MMP28Q9H239 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
MMP28Q9H239 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.67□□□□□ -0.06
MMP28Q9H239 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
MMP28Q9H239 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.67□□□□□ -0.06
MMP28Q9H239 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC14.66□□□□□ -0.06
MMP28Q9H239 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
MMP28Q9H239 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms