Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SHMT2P34897 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHMT2P34897 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.22■□□□□ 0.19
SHMT2P34897 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHMT2P34897 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.22■□□□□ 0.19
SHMT2P34897 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SHMT2P34897 ALG1L5P-201ENST00000482043 771 ntBASIC16.22■□□□□ 0.19
SHMT2P34897 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
SHMT2P34897 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.22■□□□□ 0.19
SHMT2P34897 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHMT2P34897 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.22■□□□□ 0.19
SHMT2P34897 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.22■□□□□ 0.19
SHMT2P34897 AL009183.1-201ENST00000603760 355 ntBASIC16.22■□□□□ 0.19
SHMT2P34897 AL139011.1-202ENST00000642063 584 ntBASIC16.22■□□□□ 0.19
SHMT2P34897 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHMT2P34897 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHMT2P34897 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.22■□□□□ 0.19
SHMT2P34897 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHMT2P34897 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SHMT2P34897 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SHMT2P34897 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.22■□□□□ 0.19
SHMT2P34897 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHMT2P34897 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SHMT2P34897 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SHMT2P34897 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.22■□□□□ 0.19
SHMT2P34897 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHMT2P34897 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
SHMT2P34897 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHMT2P34897 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.22■□□□□ 0.19
SHMT2P34897 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.21■□□□□ 0.19
SHMT2P34897 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
SHMT2P34897 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
SHMT2P34897 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.21■□□□□ 0.19
SHMT2P34897 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
SHMT2P34897 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.21■□□□□ 0.19
SHMT2P34897 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.21■□□□□ 0.19
SHMT2P34897 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.21■□□□□ 0.19
SHMT2P34897 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.21■□□□□ 0.19
SHMT2P34897 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.21■□□□□ 0.19
SHMT2P34897 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.21■□□□□ 0.19
SHMT2P34897 AC021097.1-201ENST00000607902 574 ntBASIC16.21■□□□□ 0.19
SHMT2P34897 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.21■□□□□ 0.19
SHMT2P34897 AL161645.1-201ENST00000622716 1255 ntBASIC16.21■□□□□ 0.19
SHMT2P34897 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
SHMT2P34897 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
SHMT2P34897 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
SHMT2P34897 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.21■□□□□ 0.19
SHMT2P34897 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
SHMT2P34897 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.21■□□□□ 0.19
SHMT2P34897 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.19
SHMT2P34897 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SHMT2P34897 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
SHMT2P34897 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SHMT2P34897 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
SHMT2P34897 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.21■□□□□ 0.18
SHMT2P34897 HYMAI-201ENST00000635591 3347 ntBASIC16.21■□□□□ 0.18
SHMT2P34897 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.2■□□□□ 0.18
SHMT2P34897 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHMT2P34897 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
SHMT2P34897 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHMT2P34897 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHMT2P34897 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SHMT2P34897 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.2■□□□□ 0.18
SHMT2P34897 AL662844.4-201ENST00000606367 2838 ntBASIC16.2■□□□□ 0.18
SHMT2P34897 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHMT2P34897 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SHMT2P34897 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SHMT2P34897 ELL2P1-201ENST00000413990 1906 ntBASIC16.2■□□□□ 0.18
SHMT2P34897 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.2■□□□□ 0.18
SHMT2P34897 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.2■□□□□ 0.18
SHMT2P34897 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SHMT2P34897 YBX1P5-201ENST00000509441 847 ntBASIC16.2■□□□□ 0.18
SHMT2P34897 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.2■□□□□ 0.18
SHMT2P34897 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.2■□□□□ 0.18
SHMT2P34897 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.2■□□□□ 0.18
SHMT2P34897 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SHMT2P34897 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms