Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
CUX2O14529 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
CUX2O14529 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
CUX2O14529 AHCYP2-201ENST00000430630 1300 ntBASIC27.77■■■□□ 2.04
CUX2O14529 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.04
CUX2O14529 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC27.76■■■□□ 2.04
CUX2O14529 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC27.76■■■□□ 2.04
CUX2O14529 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC27.76■■■□□ 2.04
CUX2O14529 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC27.76■■■□□ 2.04
CUX2O14529 AC061975.2-201ENST00000581722 295 ntBASIC27.76■■■□□ 2.04
CUX2O14529 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC27.76■■■□□ 2.04
CUX2O14529 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC27.76■■■□□ 2.04
CUX2O14529 AP000346.4-201ENST00000614827 381 ntBASIC27.76■■■□□ 2.04
CUX2O14529 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC27.76■■■□□ 2.04
CUX2O14529 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC27.76■■■□□ 2.03
CUX2O14529 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
CUX2O14529 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC27.76■■■□□ 2.03
CUX2O14529 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC27.76■■■□□ 2.03
CUX2O14529 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC27.76■■■□□ 2.03
CUX2O14529 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
CUX2O14529 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
CUX2O14529 EEF1DP6-201ENST00000449232 372 ntBASIC27.76■■■□□ 2.03
CUX2O14529 PPOX-204ENST00000462866 473 ntTSL 5 BASIC27.76■■■□□ 2.03
CUX2O14529 PTK7-212ENST00000476760 902 ntTSL 2 BASIC27.76■■■□□ 2.03
CUX2O14529 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
CUX2O14529 AC009486.1-201ENST00000569860 813 ntBASIC27.76■■■□□ 2.03
CUX2O14529 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC27.76■■■□□ 2.03
CUX2O14529 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
CUX2O14529 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
CUX2O14529 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
CUX2O14529 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
CUX2O14529 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
CUX2O14529 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
CUX2O14529 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
CUX2O14529 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
CUX2O14529 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
CUX2O14529 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
CUX2O14529 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC27.75■■■□□ 2.03
CUX2O14529 RPSAP36-202ENST00000494591 1261 ntBASIC27.75■■■□□ 2.03
CUX2O14529 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC27.75■■■□□ 2.03
CUX2O14529 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC27.75■■■□□ 2.03
CUX2O14529 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC27.75■■■□□ 2.03
CUX2O14529 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC27.75■■■□□ 2.03
CUX2O14529 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC27.75■■■□□ 2.03
CUX2O14529 AC116353.5-201ENST00000638148 1699 ntBASIC27.75■■■□□ 2.03
CUX2O14529 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
CUX2O14529 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC27.75■■■□□ 2.03
CUX2O14529 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
CUX2O14529 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC27.74■■■□□ 2.03
CUX2O14529 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
CUX2O14529 INTS4P2-202ENST00000614726 2019 ntBASIC27.74■■■□□ 2.03
CUX2O14529 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC27.74■■■□□ 2.03
CUX2O14529 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC27.74■■■□□ 2.03
CUX2O14529 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
CUX2O14529 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC27.74■■■□□ 2.03
CUX2O14529 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
CUX2O14529 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
CUX2O14529 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC27.74■■■□□ 2.03
CUX2O14529 SIGLEC29P-201ENST00000599873 1114 ntBASIC27.74■■■□□ 2.03
CUX2O14529 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC27.74■■■□□ 2.03
CUX2O14529 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
CUX2O14529 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
CUX2O14529 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
CUX2O14529 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC27.73■■■□□ 2.03
CUX2O14529 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC27.73■■■□□ 2.03
CUX2O14529 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC27.73■■■□□ 2.03
CUX2O14529 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
CUX2O14529 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC27.73■■■□□ 2.03
CUX2O14529 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC27.73■■■□□ 2.03
CUX2O14529 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC27.73■■■□□ 2.03
CUX2O14529 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC27.73■■■□□ 2.03
CUX2O14529 CLUHP6-201ENST00000580789 941 ntBASIC27.73■■■□□ 2.03
CUX2O14529 AL353726.2-201ENST00000623259 884 ntBASIC27.73■■■□□ 2.03
CUX2O14529 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC27.73■■■□□ 2.03
CUX2O14529 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
CUX2O14529 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
CUX2O14529 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC27.73■■■□□ 2.03
CUX2O14529 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
CUX2O14529 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC27.73■■■□□ 2.03
CUX2O14529 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
CUX2O14529 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC27.73■■■□□ 2.03
CUX2O14529 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC27.73■■■□□ 2.03
CUX2O14529 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC27.73■■■□□ 2.03
CUX2O14529 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
CUX2O14529 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC27.72■■■□□ 2.03
CUX2O14529 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC27.72■■■□□ 2.03
CUX2O14529 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC27.72■■■□□ 2.03
CUX2O14529 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
CUX2O14529 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC27.72■■■□□ 2.03
CUX2O14529 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC27.72■■■□□ 2.03
CUX2O14529 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC27.72■■■□□ 2.03
CUX2O14529 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
CUX2O14529 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC27.72■■■□□ 2.03
CUX2O14529 RN7SL736P-201ENST00000613111 269 ntBASIC27.72■■■□□ 2.03
CUX2O14529 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC27.72■■■□□ 2.03
CUX2O14529 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC27.72■■■□□ 2.03
CUX2O14529 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
CUX2O14529 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC27.72■■■□□ 2.03
CUX2O14529 MSTO2P-201ENST00000314835 1709 ntBASIC27.72■■■□□ 2.03
CUX2O14529 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms