Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH9Q9ULB4 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH9Q9ULB4 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.45■□□□□ 0.38
CDH9Q9ULB4 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH9Q9ULB4 UBALD1-205ENST00000590891 2641 ntBASIC17.45■□□□□ 0.38
CDH9Q9ULB4 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.45■□□□□ 0.38
CDH9Q9ULB4 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH9Q9ULB4 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH9Q9ULB4 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH9Q9ULB4 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH9Q9ULB4 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH9Q9ULB4 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 MIR6080-201ENST00000617359 66 ntBASIC17.44■□□□□ 0.38
CDH9Q9ULB4 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 AC008677.1-201ENST00000519230 1561 ntBASIC17.44■□□□□ 0.38
CDH9Q9ULB4 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 TUBB3P1-201ENST00000405796 1332 ntBASIC17.44■□□□□ 0.38
CDH9Q9ULB4 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.44■□□□□ 0.38
CDH9Q9ULB4 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.43■□□□□ 0.38
CDH9Q9ULB4 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 AC051619.7-201ENST00000568314 623 ntBASIC17.43■□□□□ 0.38
CDH9Q9ULB4 AL355385.1-201ENST00000606123 409 ntBASIC17.43■□□□□ 0.38
CDH9Q9ULB4 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 AC018529.1-201ENST00000613063 361 ntBASIC17.43■□□□□ 0.38
CDH9Q9ULB4 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH9Q9ULB4 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDH9Q9ULB4 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CDH9Q9ULB4 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
CDH9Q9ULB4 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CDH9Q9ULB4 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CDH9Q9ULB4 AL589702.1-201ENST00000641229 1509 ntBASIC17.42■□□□□ 0.38
CDH9Q9ULB4 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.42■□□□□ 0.38
CDH9Q9ULB4 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CDH9Q9ULB4 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CDH9Q9ULB4 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CDH9Q9ULB4 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.42■□□□□ 0.38
CDH9Q9ULB4 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CDH9Q9ULB4 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CDH9Q9ULB4 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CDH9Q9ULB4 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.42■□□□□ 0.38
CDH9Q9ULB4 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.42■□□□□ 0.38
CDH9Q9ULB4 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDH9Q9ULB4 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.42■□□□□ 0.38
CDH9Q9ULB4 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.42■□□□□ 0.38
CDH9Q9ULB4 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.42■□□□□ 0.38
CDH9Q9ULB4 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms