Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHANK3Q9BYB0 FO393414.2-201ENST00000405153 598 ntBASIC21.02■□□□□ 0.96
SHANK3Q9BYB0 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SHANK3Q9BYB0 FTH1P14-201ENST00000482930 551 ntBASIC21.02■□□□□ 0.96
SHANK3Q9BYB0 ZNF767P-206ENST00000513792 565 ntBASIC21.02■□□□□ 0.96
SHANK3Q9BYB0 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC21.02■□□□□ 0.96
SHANK3Q9BYB0 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC21.02■□□□□ 0.96
SHANK3Q9BYB0 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC21.02■□□□□ 0.96
SHANK3Q9BYB0 PAM16-215ENST00000577031 548 ntTSL 4 BASIC21.02■□□□□ 0.96
SHANK3Q9BYB0 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
SHANK3Q9BYB0 AL049840.4-201ENST00000602422 811 ntBASIC21.02■□□□□ 0.96
SHANK3Q9BYB0 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC21.02■□□□□ 0.96
SHANK3Q9BYB0 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHANK3Q9BYB0 EML3-217ENST00000531557 2509 ntTSL 5 BASIC21.02■□□□□ 0.96
SHANK3Q9BYB0 AC006538.1-201ENST00000567905 1585 ntBASIC21.02■□□□□ 0.96
SHANK3Q9BYB0 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
SHANK3Q9BYB0 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SHANK3Q9BYB0 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC21.02■□□□□ 0.95
SHANK3Q9BYB0 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
SHANK3Q9BYB0 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SHANK3Q9BYB0 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
SHANK3Q9BYB0 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 CSF2RBP1-201ENST00000447905 391 ntBASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 RN7SL399P-201ENST00000471648 279 ntBASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 ELK2AP-201ENST00000392510 1007 ntBASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 AC108725.1-201ENST00000495472 409 ntBASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SHANK3Q9BYB0 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
SHANK3Q9BYB0 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SHANK3Q9BYB0 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC21■□□□□ 0.95
SHANK3Q9BYB0 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC21■□□□□ 0.95
SHANK3Q9BYB0 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC21■□□□□ 0.95
SHANK3Q9BYB0 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC21■□□□□ 0.95
SHANK3Q9BYB0 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SHANK3Q9BYB0 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC21■□□□□ 0.95
SHANK3Q9BYB0 NME4-207ENST00000450036 985 ntTSL 3 BASIC21■□□□□ 0.95
SHANK3Q9BYB0 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC21■□□□□ 0.95
SHANK3Q9BYB0 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC21■□□□□ 0.95
SHANK3Q9BYB0 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC21■□□□□ 0.95
SHANK3Q9BYB0 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC21■□□□□ 0.95
SHANK3Q9BYB0 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC21■□□□□ 0.95
SHANK3Q9BYB0 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC21■□□□□ 0.95
SHANK3Q9BYB0 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SHANK3Q9BYB0 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SHANK3Q9BYB0 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC21■□□□□ 0.95
SHANK3Q9BYB0 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SHANK3Q9BYB0 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC21■□□□□ 0.95
SHANK3Q9BYB0 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SHANK3Q9BYB0 AC078925.2-201ENST00000624013 1973 ntBASIC21■□□□□ 0.95
SHANK3Q9BYB0 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 AC005229.1-201ENST00000392885 409 ntBASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 TPI1-206ENST00000488464 791 ntTSL 5 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 AC106760.1-201ENST00000508690 800 ntBASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 ARL16-210ENST00000574938 751 ntTSL 2 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 TUBB1P2-201ENST00000422712 1306 ntBASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 TUBB1P1-201ENST00000503144 1300 ntBASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 AC005915.1-201ENST00000624912 2018 ntBASIC20.99■□□□□ 0.95
SHANK3Q9BYB0 AC139713.2-201ENST00000641328 2723 ntBASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms