Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 AC007274.1-201ENST00000439805 662 ntBASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SHROOM3Q8TF72 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.29
SHROOM3Q8TF72 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SHROOM3Q8TF72 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SHROOM3Q8TF72 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
SHROOM3Q8TF72 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
SHROOM3Q8TF72 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
SHROOM3Q8TF72 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
SHROOM3Q8TF72 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SHROOM3Q8TF72 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.29
SHROOM3Q8TF72 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.83■□□□□ 0.29
SHROOM3Q8TF72 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SHROOM3Q8TF72 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SHROOM3Q8TF72 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SHROOM3Q8TF72 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
SHROOM3Q8TF72 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 AL035252.4-201ENST00000624174 288 ntBASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHROOM3Q8TF72 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 KRT8P48-201ENST00000515599 1220 ntBASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 MPDU1-223ENST00000582151 728 ntBASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 AC106028.4-201ENST00000614509 607 ntBASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 AC073439.1-201ENST00000624121 1774 ntBASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 AC245100.5-201ENST00000452108 331 ntBASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 SNHG9-202ENST00000564014 471 ntBASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 AL161645.1-201ENST00000622716 1255 ntBASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 ELL2P1-201ENST00000413990 1906 ntBASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms