Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13CQ709C8 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC13.58□□□□□ -0.24
VPS13CQ709C8 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13CQ709C8 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13CQ709C8 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13CQ709C8 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13CQ709C8 OSM-203ENST00000403463 464 ntTSL 3 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 CTBP2P5-201ENST00000454986 1264 ntBASIC13.57□□□□□ -0.24
VPS13CQ709C8 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13CQ709C8 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13CQ709C8 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 SPDYE17-201ENST00000412399 783 ntBASIC13.57□□□□□ -0.24
VPS13CQ709C8 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 AC098859.1-201ENST00000502915 1238 ntBASIC13.57□□□□□ -0.24
VPS13CQ709C8 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13CQ709C8 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 AC020765.3-201ENST00000613051 740 ntBASIC13.57□□□□□ -0.24
VPS13CQ709C8 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13CQ709C8 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13CQ709C8 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13CQ709C8 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13CQ709C8 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13CQ709C8 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13CQ709C8 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13CQ709C8 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13CQ709C8 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13CQ709C8 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13CQ709C8 MIR1247-201ENST00000408206 136 ntBASIC13.57□□□□□ -0.24
VPS13CQ709C8 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
VPS13CQ709C8 AC006538.1-201ENST00000567905 1585 ntBASIC13.57□□□□□ -0.24
VPS13CQ709C8 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13CQ709C8 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13CQ709C8 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13CQ709C8 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
VPS13CQ709C8 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13CQ709C8 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13CQ709C8 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13CQ709C8 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13CQ709C8 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13CQ709C8 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC13.56□□□□□ -0.24
VPS13CQ709C8 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13CQ709C8 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC13.56□□□□□ -0.24
VPS13CQ709C8 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13CQ709C8 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC13.56□□□□□ -0.24
VPS13CQ709C8 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.56□□□□□ -0.24
VPS13CQ709C8 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC13.56□□□□□ -0.24
VPS13CQ709C8 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC13.56□□□□□ -0.24
VPS13CQ709C8 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13CQ709C8 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13CQ709C8 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13CQ709C8 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13CQ709C8 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
VPS13CQ709C8 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
VPS13CQ709C8 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC13.56□□□□□ -0.24
VPS13CQ709C8 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13CQ709C8 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13CQ709C8 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC13.56□□□□□ -0.24
VPS13CQ709C8 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13CQ709C8 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13CQ709C8 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
VPS13CQ709C8 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
VPS13CQ709C8 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC13.56□□□□□ -0.24
VPS13CQ709C8 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
VPS13CQ709C8 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
VPS13CQ709C8 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
VPS13CQ709C8 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC13.56□□□□□ -0.24
VPS13CQ709C8 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13CQ709C8 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13CQ709C8 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13CQ709C8 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13CQ709C8 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13CQ709C8 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC13.55□□□□□ -0.24
VPS13CQ709C8 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC13.55□□□□□ -0.24
VPS13CQ709C8 ELK2AP-201ENST00000392510 1007 ntBASIC13.55□□□□□ -0.24
VPS13CQ709C8 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13CQ709C8 MIR663B-201ENST00000408361 115 ntBASIC13.55□□□□□ -0.24
VPS13CQ709C8 NEU3-203ENST00000529024 581 ntTSL 3 BASIC13.55□□□□□ -0.24
VPS13CQ709C8 DUX4L45-201ENST00000566406 1057 ntBASIC13.55□□□□□ -0.24
VPS13CQ709C8 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC13.55□□□□□ -0.24
VPS13CQ709C8 NAA38-207ENST00000576861 556 ntTSL 3 BASIC13.55□□□□□ -0.24
VPS13CQ709C8 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC13.55□□□□□ -0.24
VPS13CQ709C8 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC13.55□□□□□ -0.24
VPS13CQ709C8 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC13.55□□□□□ -0.24
VPS13CQ709C8 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13CQ709C8 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms