Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CUX1P39880 GRN-214ENST00000589265 1632 ntTSL 5 BASIC27.22■■□□□ 1.95
CUX1P39880 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC27.22■■□□□ 1.95
CUX1P39880 AC006538.1-201ENST00000567905 1585 ntBASIC27.21■■□□□ 1.95
CUX1P39880 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
CUX1P39880 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC27.21■■□□□ 1.95
CUX1P39880 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC27.21■■□□□ 1.95
CUX1P39880 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC27.21■■□□□ 1.95
CUX1P39880 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC27.21■■□□□ 1.95
CUX1P39880 AC068587.3-201ENST00000526613 355 ntBASIC27.21■■□□□ 1.95
CUX1P39880 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC27.21■■□□□ 1.95
CUX1P39880 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC27.21■■□□□ 1.95
CUX1P39880 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC27.21■■□□□ 1.95
CUX1P39880 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC27.21■■□□□ 1.95
CUX1P39880 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC27.21■■□□□ 1.95
CUX1P39880 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC27.21■■□□□ 1.95
CUX1P39880 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC27.21■■□□□ 1.95
CUX1P39880 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC27.21■■□□□ 1.95
CUX1P39880 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CUX1P39880 RNA5SP412-201ENST00000516234 123 ntBASIC27.21■■□□□ 1.95
CUX1P39880 CD74-212ENST00000524315 584 ntTSL 5 BASIC27.21■■□□□ 1.95
CUX1P39880 TIMM17BP1-201ENST00000545713 516 ntBASIC27.21■■□□□ 1.95
CUX1P39880 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC27.21■■□□□ 1.95
CUX1P39880 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC27.2■■□□□ 1.95
CUX1P39880 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC27.2■■□□□ 1.95
CUX1P39880 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
CUX1P39880 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
CUX1P39880 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC27.2■■□□□ 1.94
CUX1P39880 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC27.2■■□□□ 1.94
CUX1P39880 AC005229.1-201ENST00000392885 409 ntBASIC27.2■■□□□ 1.94
CUX1P39880 ACTG1P3-201ENST00000431775 1114 ntBASIC27.2■■□□□ 1.94
CUX1P39880 KLF2P4-201ENST00000451959 1225 ntBASIC27.2■■□□□ 1.94
CUX1P39880 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC27.2■■□□□ 1.94
CUX1P39880 AL359711.2-201ENST00000563105 872 ntBASIC27.2■■□□□ 1.94
CUX1P39880 IGHV3OR16-16-201ENST00000563644 343 ntBASIC27.2■■□□□ 1.94
CUX1P39880 GNRHR2-203ENST00000581100 1187 ntBASIC27.2■■□□□ 1.94
CUX1P39880 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC27.2■■□□□ 1.94
CUX1P39880 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC27.2■■□□□ 1.94
CUX1P39880 AC020907.1-201ENST00000616460 1350 ntBASIC27.2■■□□□ 1.94
CUX1P39880 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC27.2■■□□□ 1.94
CUX1P39880 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC27.19■■□□□ 1.94
CUX1P39880 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC27.19■■□□□ 1.94
CUX1P39880 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CUX1P39880 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC27.19■■□□□ 1.94
CUX1P39880 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CUX1P39880 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC27.19■■□□□ 1.94
CUX1P39880 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
CUX1P39880 INTS4P2-202ENST00000614726 2019 ntBASIC27.19■■□□□ 1.94
CUX1P39880 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CUX1P39880 AC092933.1-201ENST00000393644 945 ntBASIC27.19■■□□□ 1.94
CUX1P39880 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CUX1P39880 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC27.19■■□□□ 1.94
CUX1P39880 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC27.19■■□□□ 1.94
CUX1P39880 FXR1-221ENST00000491674 365 ntTSL 2 BASIC27.19■■□□□ 1.94
CUX1P39880 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC27.19■■□□□ 1.94
CUX1P39880 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC27.19■■□□□ 1.94
CUX1P39880 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC27.19■■□□□ 1.94
CUX1P39880 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC27.19■■□□□ 1.94
CUX1P39880 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CUX1P39880 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC27.19■■□□□ 1.94
CUX1P39880 KRT8P22-201ENST00000562317 1415 ntBASIC27.18■■□□□ 1.94
CUX1P39880 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC27.18■■□□□ 1.94
CUX1P39880 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC27.18■■□□□ 1.94
CUX1P39880 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC27.18■■□□□ 1.94
CUX1P39880 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
CUX1P39880 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC27.18■■□□□ 1.94
CUX1P39880 KRT18P64-201ENST00000434946 1219 ntBASIC27.18■■□□□ 1.94
CUX1P39880 TARDBPP1-201ENST00000442013 1203 ntBASIC27.18■■□□□ 1.94
CUX1P39880 FO681548.1-201ENST00000455617 1132 ntBASIC27.18■■□□□ 1.94
CUX1P39880 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC27.18■■□□□ 1.94
CUX1P39880 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC27.18■■□□□ 1.94
CUX1P39880 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC27.18■■□□□ 1.94
CUX1P39880 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
CUX1P39880 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
CUX1P39880 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC27.18■■□□□ 1.94
CUX1P39880 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC27.17■■□□□ 1.94
CUX1P39880 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC27.17■■□□□ 1.94
CUX1P39880 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC27.17■■□□□ 1.94
CUX1P39880 BCYRN1-201ENST00000418539 200 ntBASIC27.17■■□□□ 1.94
CUX1P39880 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC27.17■■□□□ 1.94
CUX1P39880 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CUX1P39880 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC27.17■■□□□ 1.94
CUX1P39880 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC27.17■■□□□ 1.94
CUX1P39880 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC27.17■■□□□ 1.94
CUX1P39880 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
CUX1P39880 TP73-213ENST00000604479 1623 ntTSL 5 BASIC27.17■■□□□ 1.94
CUX1P39880 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC27.17■■□□□ 1.94
CUX1P39880 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC27.17■■□□□ 1.94
CUX1P39880 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CUX1P39880 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
CUX1P39880 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC27.17■■□□□ 1.94
CUX1P39880 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CUX1P39880 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC27.17■■□□□ 1.94
CUX1P39880 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC27.17■■□□□ 1.94
CUX1P39880 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
CUX1P39880 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC27.17■■□□□ 1.94
CUX1P39880 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CUX1P39880 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC27.17■■□□□ 1.94
CUX1P39880 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC27.17■■□□□ 1.94
CUX1P39880 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms