Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMARCA1P28370 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SMARCA1P28370 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC18.91■□□□□ 0.62
SMARCA1P28370 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC18.91■□□□□ 0.62
SMARCA1P28370 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.91■□□□□ 0.62
SMARCA1P28370 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMARCA1P28370 METTL21AP1-201ENST00000438852 635 ntBASIC18.91■□□□□ 0.62
SMARCA1P28370 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMARCA1P28370 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SMARCA1P28370 AC018529.1-201ENST00000613063 361 ntBASIC18.91■□□□□ 0.62
SMARCA1P28370 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
SMARCA1P28370 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.91■□□□□ 0.62
SMARCA1P28370 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.91■□□□□ 0.62
SMARCA1P28370 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.91■□□□□ 0.62
SMARCA1P28370 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMARCA1P28370 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SMARCA1P28370 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.91■□□□□ 0.62
SMARCA1P28370 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMARCA1P28370 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC18.91■□□□□ 0.62
SMARCA1P28370 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC18.91■□□□□ 0.62
SMARCA1P28370 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SMARCA1P28370 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SMARCA1P28370 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC18.91■□□□□ 0.62
SMARCA1P28370 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC18.9■□□□□ 0.62
SMARCA1P28370 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SMARCA1P28370 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCA1P28370 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCA1P28370 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SMARCA1P28370 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.9■□□□□ 0.62
SMARCA1P28370 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCA1P28370 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
SMARCA1P28370 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC18.9■□□□□ 0.62
SMARCA1P28370 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCA1P28370 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
SMARCA1P28370 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCA1P28370 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCA1P28370 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SMARCA1P28370 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCA1P28370 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCA1P28370 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SMARCA1P28370 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCA1P28370 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.9■□□□□ 0.62
SMARCA1P28370 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.9■□□□□ 0.62
SMARCA1P28370 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC18.9■□□□□ 0.62
SMARCA1P28370 AC004449.1-201ENST00000564240 433 ntBASIC18.9■□□□□ 0.62
SMARCA1P28370 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC18.9■□□□□ 0.62
SMARCA1P28370 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.9■□□□□ 0.62
SMARCA1P28370 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC18.9■□□□□ 0.62
SMARCA1P28370 MIR4321-201ENST00000592276 80 ntBASIC18.9■□□□□ 0.62
SMARCA1P28370 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC18.9■□□□□ 0.62
SMARCA1P28370 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC18.9■□□□□ 0.62
SMARCA1P28370 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.9■□□□□ 0.62
SMARCA1P28370 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SMARCA1P28370 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCA1P28370 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCA1P28370 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SMARCA1P28370 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.9■□□□□ 0.62
SMARCA1P28370 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCA1P28370 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCA1P28370 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.9■□□□□ 0.62
SMARCA1P28370 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC18.9■□□□□ 0.62
SMARCA1P28370 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCA1P28370 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCA1P28370 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCA1P28370 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMARCA1P28370 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.9■□□□□ 0.62
SMARCA1P28370 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
SMARCA1P28370 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SMARCA1P28370 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
SMARCA1P28370 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.89■□□□□ 0.61
SMARCA1P28370 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SMARCA1P28370 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SMARCA1P28370 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCA1P28370 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCA1P28370 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCA1P28370 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCA1P28370 PMS2P2-201ENST00000425039 1128 ntBASIC18.89■□□□□ 0.61
SMARCA1P28370 AC245100.5-201ENST00000452108 331 ntBASIC18.89■□□□□ 0.61
SMARCA1P28370 SLBP-205ENST00000488267 987 ntTSL 2 BASIC18.89■□□□□ 0.61
SMARCA1P28370 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC18.89■□□□□ 0.61
SMARCA1P28370 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCA1P28370 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
SMARCA1P28370 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.89■□□□□ 0.61
SMARCA1P28370 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCA1P28370 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SMARCA1P28370 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCA1P28370 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC18.89■□□□□ 0.61
SMARCA1P28370 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCA1P28370 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SMARCA1P28370 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.89■□□□□ 0.61
SMARCA1P28370 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMARCA1P28370 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SMARCA1P28370 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.88■□□□□ 0.61
SMARCA1P28370 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SMARCA1P28370 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
SMARCA1P28370 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCA1P28370 PCDHA14-201ENST00000506751 2298 ntBASIC18.88■□□□□ 0.61
SMARCA1P28370 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCA1P28370 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCA1P28370 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms