Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.72■□□□□ 0.27
VIMP08670 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VIMP08670 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VIMP08670 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.72■□□□□ 0.27
VIMP08670 MYO15B-237ENST00000642007 4893 ntBASIC16.72■□□□□ 0.27
VIMP08670 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VIMP08670 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
VIMP08670 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC16.72■□□□□ 0.27
VIMP08670 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VIMP08670 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.72■□□□□ 0.27
VIMP08670 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
VIMP08670 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.72■□□□□ 0.27
VIMP08670 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.72■□□□□ 0.27
VIMP08670 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
VIMP08670 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.72■□□□□ 0.27
VIMP08670 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.72■□□□□ 0.27
VIMP08670 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VIMP08670 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VIMP08670 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.72■□□□□ 0.27
VIMP08670 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
VIMP08670 HMGA1P5-201ENST00000412453 271 ntBASIC16.72■□□□□ 0.27
VIMP08670 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VIMP08670 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC16.72■□□□□ 0.27
VIMP08670 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
VIMP08670 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
VIMP08670 DUX4L17-201ENST00000557360 1267 ntBASIC16.72■□□□□ 0.27
VIMP08670 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC16.72■□□□□ 0.27
VIMP08670 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.72■□□□□ 0.27
VIMP08670 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.72■□□□□ 0.27
VIMP08670 GLDC-219ENST00000640208 420 ntTSL 2 BASIC16.72■□□□□ 0.27
VIMP08670 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VIMP08670 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.72■□□□□ 0.27
VIMP08670 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VIMP08670 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VIMP08670 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.72■□□□□ 0.27
VIMP08670 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VIMP08670 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
VIMP08670 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.72■□□□□ 0.27
VIMP08670 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VIMP08670 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VIMP08670 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.71■□□□□ 0.27
VIMP08670 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VIMP08670 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
VIMP08670 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC16.71■□□□□ 0.27
VIMP08670 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.71■□□□□ 0.27
VIMP08670 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VIMP08670 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VIMP08670 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VIMP08670 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VIMP08670 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VIMP08670 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VIMP08670 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.71■□□□□ 0.27
VIMP08670 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VIMP08670 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
VIMP08670 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC16.71■□□□□ 0.27
VIMP08670 ECEL1P3-201ENST00000427961 737 ntBASIC16.71■□□□□ 0.27
VIMP08670 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.71■□□□□ 0.27
VIMP08670 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
VIMP08670 LINC02447-202ENST00000501888 2146 ntBASIC16.71■□□□□ 0.27
VIMP08670 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.71■□□□□ 0.27
VIMP08670 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.71■□□□□ 0.27
VIMP08670 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VIMP08670 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VIMP08670 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.71■□□□□ 0.27
VIMP08670 OR2I1P-209ENST00000641730 5365 ntBASIC16.71■□□□□ 0.27
VIMP08670 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VIMP08670 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.71■□□□□ 0.27
VIMP08670 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VIMP08670 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.71■□□□□ 0.27
VIMP08670 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VIMP08670 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VIMP08670 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.71■□□□□ 0.27
VIMP08670 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
VIMP08670 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
VIMP08670 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
VIMP08670 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC16.7■□□□□ 0.26
VIMP08670 CDC14C-201ENST00000428251 1719 ntBASIC16.7■□□□□ 0.26
VIMP08670 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC16.7■□□□□ 0.26
VIMP08670 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VIMP08670 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.7■□□□□ 0.26
VIMP08670 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.7■□□□□ 0.26
VIMP08670 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VIMP08670 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.7■□□□□ 0.26
VIMP08670 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
VIMP08670 HLA-F-220ENST00000434407 884 ntBASIC16.7■□□□□ 0.26
VIMP08670 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
VIMP08670 ZNF444P1-201ENST00000559497 298 ntBASIC16.7■□□□□ 0.26
VIMP08670 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.7■□□□□ 0.26
VIMP08670 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.7■□□□□ 0.26
VIMP08670 GPR32P1-201ENST00000601788 811 ntBASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms