Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 TUBB8P12-201ENST00000308911 1335 ntBASIC19.39■□□□□ 0.69
NUP88Q99567 TUBB7P-202ENST00000428444 1305 ntBASIC19.39■□□□□ 0.69
NUP88Q99567 TUBB8P7-204ENST00000567960 1332 ntBASIC19.39■□□□□ 0.69
NUP88Q99567 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NUP88Q99567 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NUP88Q99567 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NUP88Q99567 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
NUP88Q99567 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
NUP88Q99567 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NUP88Q99567 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
NUP88Q99567 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NUP88Q99567 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
NUP88Q99567 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NUP88Q99567 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
NUP88Q99567 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
NUP88Q99567 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC19.38■□□□□ 0.69
NUP88Q99567 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC19.38■□□□□ 0.69
NUP88Q99567 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
NUP88Q99567 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
NUP88Q99567 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NUP88Q99567 CD81-202ENST00000381036 880 ntTSL 3 BASIC19.38■□□□□ 0.69
NUP88Q99567 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC19.38■□□□□ 0.69
NUP88Q99567 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NUP88Q99567 FAM8A3P-201ENST00000427218 844 ntBASIC19.38■□□□□ 0.69
NUP88Q99567 STARD13-205ENST00000439831 945 ntTSL 2 BASIC19.38■□□□□ 0.69
NUP88Q99567 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
NUP88Q99567 BCRP1-201ENST00000444246 691 ntBASIC19.38■□□□□ 0.69
NUP88Q99567 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC19.38■□□□□ 0.69
NUP88Q99567 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC19.38■□□□□ 0.69
NUP88Q99567 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC19.38■□□□□ 0.69
NUP88Q99567 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC19.38■□□□□ 0.69
NUP88Q99567 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.38■□□□□ 0.69
NUP88Q99567 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC19.38■□□□□ 0.69
NUP88Q99567 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
NUP88Q99567 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
NUP88Q99567 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC19.38■□□□□ 0.69
NUP88Q99567 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC19.38■□□□□ 0.69
NUP88Q99567 AL512356.2-201ENST00000546955 174 ntBASIC19.38■□□□□ 0.69
NUP88Q99567 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.38■□□□□ 0.69
NUP88Q99567 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
NUP88Q99567 AC051619.7-201ENST00000568314 623 ntBASIC19.38■□□□□ 0.69
NUP88Q99567 AC011467.4-201ENST00000594891 528 ntBASIC19.38■□□□□ 0.69
NUP88Q99567 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
NUP88Q99567 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
NUP88Q99567 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NUP88Q99567 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NUP88Q99567 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
NUP88Q99567 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
NUP88Q99567 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NUP88Q99567 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NUP88Q99567 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC19.37■□□□□ 0.69
NUP88Q99567 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NUP88Q99567 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NUP88Q99567 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NUP88Q99567 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC19.37■□□□□ 0.69
NUP88Q99567 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
NUP88Q99567 SNX33P1-201ENST00000592116 1762 ntBASIC19.37■□□□□ 0.69
NUP88Q99567 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
NUP88Q99567 AC006277.1-201ENST00000624348 1610 ntBASIC19.37■□□□□ 0.69
NUP88Q99567 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
NUP88Q99567 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
NUP88Q99567 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
NUP88Q99567 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
NUP88Q99567 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NUP88Q99567 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC19.37■□□□□ 0.69
NUP88Q99567 TUBB3P1-201ENST00000405796 1332 ntBASIC19.37■□□□□ 0.69
NUP88Q99567 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
NUP88Q99567 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
NUP88Q99567 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NUP88Q99567 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
NUP88Q99567 MIR346-201ENST00000362234 95 ntBASIC19.37■□□□□ 0.69
NUP88Q99567 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
NUP88Q99567 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC19.37■□□□□ 0.69
NUP88Q99567 CNN2P2-201ENST00000443536 909 ntBASIC19.37■□□□□ 0.69
NUP88Q99567 CNN2P3-201ENST00000450201 906 ntBASIC19.37■□□□□ 0.69
NUP88Q99567 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC19.37■□□□□ 0.69
NUP88Q99567 AC015911.4-201ENST00000588022 1070 ntBASIC19.37■□□□□ 0.69
NUP88Q99567 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
NUP88Q99567 AL136317.3-201ENST00000618497 906 ntBASIC19.37■□□□□ 0.69
NUP88Q99567 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NUP88Q99567 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
NUP88Q99567 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.37■□□□□ 0.69
NUP88Q99567 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NUP88Q99567 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
NUP88Q99567 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.37■□□□□ 0.69
NUP88Q99567 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
NUP88Q99567 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
NUP88Q99567 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
NUP88Q99567 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC19.36■□□□□ 0.69
NUP88Q99567 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP88Q99567 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC19.36■□□□□ 0.69
NUP88Q99567 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP88Q99567 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NUP88Q99567 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP88Q99567 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP88Q99567 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
NUP88Q99567 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP88Q99567 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
NUP88Q99567 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC19.36■□□□□ 0.69
NUP88Q99567 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms