Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC19.9■□□□□ 0.78
SNED1Q8TER0 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SNED1Q8TER0 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
SNED1Q8TER0 MIR6069-201ENST00000620069 79 ntBASIC19.9■□□□□ 0.78
SNED1Q8TER0 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SNED1Q8TER0 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SNED1Q8TER0 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SNED1Q8TER0 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SNED1Q8TER0 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SNED1Q8TER0 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SNED1Q8TER0 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SNED1Q8TER0 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SNED1Q8TER0 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
SNED1Q8TER0 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
SNED1Q8TER0 RELA-227ENST00000615805 2236 ntTSL 5 BASIC19.89■□□□□ 0.78
SNED1Q8TER0 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SNED1Q8TER0 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SNED1Q8TER0 RPF1-202ENST00000370656 724 ntTSL 2 BASIC19.89■□□□□ 0.77
SNED1Q8TER0 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SNED1Q8TER0 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
SNED1Q8TER0 MIR1908-201ENST00000410394 80 ntBASIC19.89■□□□□ 0.77
SNED1Q8TER0 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SNED1Q8TER0 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
SNED1Q8TER0 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC19.89■□□□□ 0.77
SNED1Q8TER0 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC19.89■□□□□ 0.77
SNED1Q8TER0 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SNED1Q8TER0 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC19.89■□□□□ 0.77
SNED1Q8TER0 RARRES2P5-201ENST00000564013 466 ntBASIC19.89■□□□□ 0.77
SNED1Q8TER0 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC19.89■□□□□ 0.77
SNED1Q8TER0 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC19.89■□□□□ 0.77
SNED1Q8TER0 MIR4538-201ENST00000581377 78 ntBASIC19.89■□□□□ 0.77
SNED1Q8TER0 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SNED1Q8TER0 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
SNED1Q8TER0 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC19.89■□□□□ 0.77
SNED1Q8TER0 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SNED1Q8TER0 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SNED1Q8TER0 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SNED1Q8TER0 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SNED1Q8TER0 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SNED1Q8TER0 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SNED1Q8TER0 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
SNED1Q8TER0 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.88■□□□□ 0.77
SNED1Q8TER0 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SNED1Q8TER0 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SNED1Q8TER0 BOLA2P3-201ENST00000404566 256 ntBASIC19.88■□□□□ 0.77
SNED1Q8TER0 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SNED1Q8TER0 USB1-203ENST00000539737 1212 ntTSL 2 BASIC19.88■□□□□ 0.77
SNED1Q8TER0 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SNED1Q8TER0 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC19.88■□□□□ 0.77
SNED1Q8TER0 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC19.88■□□□□ 0.77
SNED1Q8TER0 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC19.88■□□□□ 0.77
SNED1Q8TER0 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SNED1Q8TER0 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SNED1Q8TER0 AL645608.8-201ENST00000606034 2086 ntBASIC19.88■□□□□ 0.77
SNED1Q8TER0 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SNED1Q8TER0 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SNED1Q8TER0 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
SNED1Q8TER0 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SNED1Q8TER0 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SNED1Q8TER0 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SNED1Q8TER0 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SNED1Q8TER0 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SNED1Q8TER0 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SNED1Q8TER0 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SNED1Q8TER0 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC19.88■□□□□ 0.77
SNED1Q8TER0 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SNED1Q8TER0 AL031731.1-201ENST00000642131 2094 ntBASIC19.87■□□□□ 0.77
SNED1Q8TER0 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNED1Q8TER0 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SNED1Q8TER0 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNED1Q8TER0 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNED1Q8TER0 GPAA1P2-202ENST00000606848 1787 ntBASIC19.87■□□□□ 0.77
SNED1Q8TER0 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNED1Q8TER0 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
SNED1Q8TER0 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SNED1Q8TER0 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNED1Q8TER0 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SNED1Q8TER0 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC19.87■□□□□ 0.77
SNED1Q8TER0 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SNED1Q8TER0 AC104989.1-201ENST00000519711 778 ntBASIC19.87■□□□□ 0.77
SNED1Q8TER0 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNED1Q8TER0 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC19.87■□□□□ 0.77
SNED1Q8TER0 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC19.87■□□□□ 0.77
SNED1Q8TER0 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC19.87■□□□□ 0.77
SNED1Q8TER0 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC19.87■□□□□ 0.77
SNED1Q8TER0 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC19.87■□□□□ 0.77
SNED1Q8TER0 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNED1Q8TER0 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SNED1Q8TER0 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNED1Q8TER0 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNED1Q8TER0 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.87■□□□□ 0.77
SNED1Q8TER0 AC092068.3-201ENST00000587894 2016 ntBASIC19.87■□□□□ 0.77
SNED1Q8TER0 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNED1Q8TER0 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNED1Q8TER0 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SNED1Q8TER0 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNED1Q8TER0 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.87■□□□□ 0.77
SNED1Q8TER0 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNED1Q8TER0 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.86■□□□□ 0.77
SNED1Q8TER0 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms