Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC21.67■■□□□ 1.06
USP54Q70EL1 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC21.67■■□□□ 1.06
USP54Q70EL1 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC21.67■■□□□ 1.06
USP54Q70EL1 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP54Q70EL1 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP54Q70EL1 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP54Q70EL1 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP54Q70EL1 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
USP54Q70EL1 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
USP54Q70EL1 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
USP54Q70EL1 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP54Q70EL1 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC21.66■■□□□ 1.06
USP54Q70EL1 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
USP54Q70EL1 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP54Q70EL1 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP54Q70EL1 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC21.66■■□□□ 1.06
USP54Q70EL1 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP54Q70EL1 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
USP54Q70EL1 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
USP54Q70EL1 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC21.66■■□□□ 1.06
USP54Q70EL1 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP54Q70EL1 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP54Q70EL1 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC21.66■■□□□ 1.06
USP54Q70EL1 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
USP54Q70EL1 AC004987.2-201ENST00000395959 1148 ntBASIC21.66■■□□□ 1.06
USP54Q70EL1 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC21.66■■□□□ 1.06
USP54Q70EL1 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
USP54Q70EL1 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC21.66■■□□□ 1.06
USP54Q70EL1 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC21.66■■□□□ 1.06
USP54Q70EL1 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC21.66■■□□□ 1.06
USP54Q70EL1 RAB43P1-201ENST00000561790 589 ntBASIC21.66■■□□□ 1.06
USP54Q70EL1 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC21.66■■□□□ 1.06
USP54Q70EL1 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC21.66■■□□□ 1.06
USP54Q70EL1 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC21.66■■□□□ 1.06
USP54Q70EL1 WNT11-204ENST00000621122 789 ntTSL 5 BASIC21.66■■□□□ 1.06
USP54Q70EL1 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC21.66■■□□□ 1.06
USP54Q70EL1 HNRNPA1P48-201ENST00000562726 1377 ntBASIC21.66■■□□□ 1.06
USP54Q70EL1 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USP54Q70EL1 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
USP54Q70EL1 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC21.65■■□□□ 1.06
USP54Q70EL1 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC21.65■■□□□ 1.06
USP54Q70EL1 AL691432.1-201ENST00000596308 1422 ntBASIC21.65■■□□□ 1.06
USP54Q70EL1 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC21.65■■□□□ 1.06
USP54Q70EL1 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC21.65■■□□□ 1.06
USP54Q70EL1 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP54Q70EL1 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC21.65■■□□□ 1.06
USP54Q70EL1 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP54Q70EL1 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
USP54Q70EL1 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC21.65■■□□□ 1.06
USP54Q70EL1 AC234783.1-201ENST00000441761 496 ntBASIC21.65■■□□□ 1.06
USP54Q70EL1 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC21.65■■□□□ 1.06
USP54Q70EL1 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC21.65■■□□□ 1.06
USP54Q70EL1 KRT223P-202ENST00000449164 1292 ntBASIC21.65■■□□□ 1.06
USP54Q70EL1 AC243562.2-201ENST00000561247 970 ntBASIC21.65■■□□□ 1.06
USP54Q70EL1 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC21.65■■□□□ 1.06
USP54Q70EL1 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC21.65■■□□□ 1.06
USP54Q70EL1 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP54Q70EL1 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
USP54Q70EL1 PCDHB18P-201ENST00000524813 2368 ntBASIC21.65■■□□□ 1.06
USP54Q70EL1 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
USP54Q70EL1 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.06
USP54Q70EL1 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
USP54Q70EL1 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
USP54Q70EL1 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC21.64■■□□□ 1.05
USP54Q70EL1 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP54Q70EL1 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP54Q70EL1 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
USP54Q70EL1 AC136604.1-201ENST00000418535 575 ntBASIC21.64■■□□□ 1.05
USP54Q70EL1 AC022494.1-201ENST00000466044 728 ntBASIC21.64■■□□□ 1.05
USP54Q70EL1 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
USP54Q70EL1 NEU3-203ENST00000529024 581 ntTSL 3 BASIC21.64■■□□□ 1.05
USP54Q70EL1 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC21.64■■□□□ 1.05
USP54Q70EL1 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC21.64■■□□□ 1.05
USP54Q70EL1 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
USP54Q70EL1 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
USP54Q70EL1 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP54Q70EL1 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
USP54Q70EL1 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC21.64■■□□□ 1.05
USP54Q70EL1 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
USP54Q70EL1 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC21.64■■□□□ 1.05
USP54Q70EL1 CEP83-AS1-201ENST00000623122 2482 ntBASIC21.64■■□□□ 1.05
USP54Q70EL1 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP54Q70EL1 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
USP54Q70EL1 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC21.64■■□□□ 1.05
USP54Q70EL1 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP54Q70EL1 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP54Q70EL1 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC21.63■■□□□ 1.05
USP54Q70EL1 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
USP54Q70EL1 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USP54Q70EL1 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USP54Q70EL1 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP54Q70EL1 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP54Q70EL1 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC21.63■■□□□ 1.05
USP54Q70EL1 MIR658-201ENST00000385210 100 ntBASIC21.63■■□□□ 1.05
USP54Q70EL1 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC21.63■■□□□ 1.05
USP54Q70EL1 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC21.63■■□□□ 1.05
USP54Q70EL1 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USP54Q70EL1 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
USP54Q70EL1 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC21.63■■□□□ 1.05
USP54Q70EL1 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms