Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
USP39Q53GS9 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
USP39Q53GS9 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
USP39Q53GS9 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
USP39Q53GS9 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
USP39Q53GS9 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
USP39Q53GS9 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
USP39Q53GS9 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
USP39Q53GS9 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
USP39Q53GS9 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
USP39Q53GS9 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.85■□□□□ 0.29
USP39Q53GS9 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
USP39Q53GS9 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
USP39Q53GS9 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.85■□□□□ 0.29
USP39Q53GS9 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
USP39Q53GS9 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
USP39Q53GS9 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
USP39Q53GS9 MIR346-201ENST00000362234 95 ntBASIC16.85■□□□□ 0.29
USP39Q53GS9 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
USP39Q53GS9 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.85■□□□□ 0.29
USP39Q53GS9 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
USP39Q53GS9 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.85■□□□□ 0.29
USP39Q53GS9 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.85■□□□□ 0.29
USP39Q53GS9 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
USP39Q53GS9 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
USP39Q53GS9 NKILA-202ENST00000614771 2598 ntBASIC16.85■□□□□ 0.29
USP39Q53GS9 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
USP39Q53GS9 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
USP39Q53GS9 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
USP39Q53GS9 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
USP39Q53GS9 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
USP39Q53GS9 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
USP39Q53GS9 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.85■□□□□ 0.29
USP39Q53GS9 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
USP39Q53GS9 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.85■□□□□ 0.29
USP39Q53GS9 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
USP39Q53GS9 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.85■□□□□ 0.29
USP39Q53GS9 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
USP39Q53GS9 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
USP39Q53GS9 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
USP39Q53GS9 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.84■□□□□ 0.29
USP39Q53GS9 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
USP39Q53GS9 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.84■□□□□ 0.29
USP39Q53GS9 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP39Q53GS9 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
USP39Q53GS9 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP39Q53GS9 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP39Q53GS9 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP39Q53GS9 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
USP39Q53GS9 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.84■□□□□ 0.29
USP39Q53GS9 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP39Q53GS9 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP39Q53GS9 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
USP39Q53GS9 RNU1-129P-201ENST00000384064 167 ntBASIC16.84■□□□□ 0.29
USP39Q53GS9 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.84■□□□□ 0.29
USP39Q53GS9 CRB3P1-201ENST00000449338 276 ntBASIC16.84■□□□□ 0.29
USP39Q53GS9 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
USP39Q53GS9 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC16.84■□□□□ 0.29
USP39Q53GS9 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
USP39Q53GS9 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.84■□□□□ 0.29
USP39Q53GS9 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.84■□□□□ 0.29
USP39Q53GS9 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.84■□□□□ 0.29
USP39Q53GS9 MIR3909-201ENST00000579518 119 ntBASIC16.84■□□□□ 0.29
USP39Q53GS9 AC091167.2-201ENST00000579581 588 ntBASIC16.84■□□□□ 0.29
USP39Q53GS9 U1.21-201ENST00000580816 167 ntBASIC16.84■□□□□ 0.29
USP39Q53GS9 MIR4453-201ENST00000584019 89 ntBASIC16.84■□□□□ 0.29
USP39Q53GS9 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP39Q53GS9 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
USP39Q53GS9 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP39Q53GS9 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP39Q53GS9 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP39Q53GS9 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
USP39Q53GS9 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.84■□□□□ 0.29
USP39Q53GS9 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
USP39Q53GS9 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP39Q53GS9 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
USP39Q53GS9 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP39Q53GS9 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP39Q53GS9 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
USP39Q53GS9 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
USP39Q53GS9 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
USP39Q53GS9 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
USP39Q53GS9 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
USP39Q53GS9 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
USP39Q53GS9 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
USP39Q53GS9 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
USP39Q53GS9 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
USP39Q53GS9 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
USP39Q53GS9 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.83■□□□□ 0.28
USP39Q53GS9 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
USP39Q53GS9 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
USP39Q53GS9 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
USP39Q53GS9 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.83■□□□□ 0.28
USP39Q53GS9 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.83■□□□□ 0.28
USP39Q53GS9 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.83■□□□□ 0.28
USP39Q53GS9 AC027369.6-201ENST00000525520 931 ntBASIC16.83■□□□□ 0.28
USP39Q53GS9 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.83■□□□□ 0.28
USP39Q53GS9 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.83■□□□□ 0.28
USP39Q53GS9 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.83■□□□□ 0.28
USP39Q53GS9 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms