Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 AC005829.1-201ENST00000570002 483 ntBASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 AC092364.2-201ENST00000596710 2692 ntBASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 AC006449.5-201ENST00000610658 2098 ntBASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 AC025580.3-201ENST00000617932 1424 ntBASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 GGT3P-204ENST00000453783 1664 ntBASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 AC211486.1-202ENST00000416371 468 ntBASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 AC211476.1-201ENST00000503899 468 ntBASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 KRT19P2-202ENST00000557173 1012 ntBASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 AP001160.2-201ENST00000596071 487 ntBASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 ME2P1-201ENST00000426028 1970 ntBASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 GGT4P-201ENST00000623672 1708 ntBASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTCHD3Q3KNS1 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms