Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 CALY-202ENST00000368555 783 ntTSL 2 BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 MEIS3P1-201ENST00000495167 958 ntBASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 AC010336.2-201ENST00000564226 506 ntBASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 AC004233.3-201ENST00000607794 1269 ntBASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 RNA5-8SN1-201ENST00000610460 153 ntBASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 RNA5-8SN5-202ENST00000612463 153 ntBASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 RNA5-8SN4-201ENST00000613359 153 ntBASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 RNA5-8SN5-201ENST00000619471 153 ntBASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 AC092171.3-201ENST00000610122 2651 ntBASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHROOM1Q2M3G4 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 GRAP-202ENST00000395635 834 ntTSL 2 BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 AC044860.1-202ENST00000559481 777 ntBASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 AC104794.3-201ENST00000566840 1248 ntBASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 AC063926.2-201ENST00000623766 1308 ntBASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHROOM1Q2M3G4 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 EDF1-203ENST00000371649 790 ntTSL 2 BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 RN7SL692P-201ENST00000464677 288 ntBASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 AL132655.2-201ENST00000596276 594 ntBASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 AC006538.1-201ENST00000567905 1585 ntBASIC19.18■□□□□ 0.66
SHROOM1Q2M3G4 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms