Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC23.02■■□□□ 1.28
MSH5O43196 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
MSH5O43196 NARF-204ENST00000390006 1766 ntTSL 2 BASIC23.02■■□□□ 1.28
MSH5O43196 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
MSH5O43196 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
MSH5O43196 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC23.02■■□□□ 1.28
MSH5O43196 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
MSH5O43196 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
MSH5O43196 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
MSH5O43196 RNASE4-201ENST00000397995 853 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
MSH5O43196 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
MSH5O43196 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC23.02■■□□□ 1.28
MSH5O43196 AL512326.1-201ENST00000443050 721 ntBASIC23.02■■□□□ 1.28
MSH5O43196 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC23.02■■□□□ 1.28
MSH5O43196 AC013439.1-201ENST00000449965 1239 ntBASIC23.02■■□□□ 1.28
MSH5O43196 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC23.02■■□□□ 1.28
MSH5O43196 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC23.02■■□□□ 1.28
MSH5O43196 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC23.02■■□□□ 1.28
MSH5O43196 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC23.02■■□□□ 1.28
MSH5O43196 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
MSH5O43196 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
MSH5O43196 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC23.02■■□□□ 1.28
MSH5O43196 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC23.02■■□□□ 1.28
MSH5O43196 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
MSH5O43196 AC099518.2-201ENST00000565802 704 ntBASIC23.02■■□□□ 1.28
MSH5O43196 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC23.02■■□□□ 1.28
MSH5O43196 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC23.02■■□□□ 1.28
MSH5O43196 BNIP3P24-201ENST00000593398 557 ntBASIC23.02■■□□□ 1.28
MSH5O43196 AC106028.4-201ENST00000614509 607 ntBASIC23.02■■□□□ 1.28
MSH5O43196 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC23.02■■□□□ 1.28
MSH5O43196 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
MSH5O43196 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC23.02■■□□□ 1.28
MSH5O43196 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC23.02■■□□□ 1.28
MSH5O43196 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
MSH5O43196 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH5O43196 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH5O43196 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH5O43196 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
MSH5O43196 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
MSH5O43196 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC23.01■■□□□ 1.27
MSH5O43196 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC23.01■■□□□ 1.27
MSH5O43196 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
MSH5O43196 DOC2GP-204ENST00000639052 2548 ntBASIC23.01■■□□□ 1.27
MSH5O43196 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
MSH5O43196 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH5O43196 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH5O43196 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH5O43196 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH5O43196 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
MSH5O43196 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
MSH5O43196 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC23.01■■□□□ 1.27
MSH5O43196 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
MSH5O43196 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC23.01■■□□□ 1.27
MSH5O43196 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC23.01■■□□□ 1.27
MSH5O43196 AC244107.1-201ENST00000442033 332 ntBASIC23.01■■□□□ 1.27
MSH5O43196 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC23.01■■□□□ 1.27
MSH5O43196 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH5O43196 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC23.01■■□□□ 1.27
MSH5O43196 LINC02413-202ENST00000552353 898 ntTSL 5 BASIC23.01■■□□□ 1.27
MSH5O43196 MIR4469-201ENST00000583919 79 ntBASIC23.01■■□□□ 1.27
MSH5O43196 AL031775.1-201ENST00000607014 887 ntBASIC23.01■■□□□ 1.27
MSH5O43196 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
MSH5O43196 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH5O43196 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH5O43196 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH5O43196 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
MSH5O43196 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
MSH5O43196 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC23.01■■□□□ 1.27
MSH5O43196 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH5O43196 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC23.01■■□□□ 1.27
MSH5O43196 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
MSH5O43196 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH5O43196 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
MSH5O43196 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
MSH5O43196 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC23■■□□□ 1.27
MSH5O43196 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
MSH5O43196 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
MSH5O43196 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
MSH5O43196 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC23■■□□□ 1.27
MSH5O43196 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
MSH5O43196 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC23■■□□□ 1.27
MSH5O43196 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
MSH5O43196 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC23■■□□□ 1.27
MSH5O43196 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
MSH5O43196 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
MSH5O43196 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC23■■□□□ 1.27
MSH5O43196 CALY-203ENST00000368558 825 ntTSL 5 BASIC23■■□□□ 1.27
MSH5O43196 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
MSH5O43196 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC23■■□□□ 1.27
MSH5O43196 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC23■■□□□ 1.27
MSH5O43196 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC23■■□□□ 1.27
MSH5O43196 AP000949.1-201ENST00000438328 629 ntBASIC23■■□□□ 1.27
MSH5O43196 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC23■■□□□ 1.27
MSH5O43196 ZRANB2-AS1-202ENST00000450461 553 ntTSL 1 (best) BASIC23■■□□□ 1.27
MSH5O43196 TVP23BP2-201ENST00000455082 615 ntBASIC23■■□□□ 1.27
MSH5O43196 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC23■■□□□ 1.27
MSH5O43196 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC23■■□□□ 1.27
MSH5O43196 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC23■■□□□ 1.27
MSH5O43196 RN7SL774P-201ENST00000577467 290 ntBASIC23■■□□□ 1.27
MSH5O43196 ADAD1P2-201ENST00000588476 646 ntBASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms