Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 AGK-211ENST00000629555 2765 ntTSL 5 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 AC002310.6-201ENST00000624451 1377 ntBASIC13.47□□□□□ -0.25
FOXA2Q9Y261 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 AL162727.3-201ENST00000635661 2787 ntBASIC13.47□□□□□ -0.25
FOXA2Q9Y261 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 KRT18P27-201ENST00000427733 1299 ntBASIC13.47□□□□□ -0.25
FOXA2Q9Y261 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 PAWRP1-201ENST00000451083 565 ntBASIC13.47□□□□□ -0.25
FOXA2Q9Y261 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 CYGB-205ENST00000590175 830 ntTSL 3 BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 AL356488.2-201ENST00000602755 427 ntBASIC13.47□□□□□ -0.25
FOXA2Q9Y261 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 ABR-203ENST00000536794 2213 ntTSL 2 BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
FOXA2Q9Y261 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 AC007950.2-201ENST00000615045 2347 ntBASIC13.46□□□□□ -0.25
FOXA2Q9Y261 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 AC006504.4-201ENST00000592118 1568 ntBASIC13.46□□□□□ -0.25
FOXA2Q9Y261 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 SNX33P1-201ENST00000592116 1762 ntBASIC13.46□□□□□ -0.25
FOXA2Q9Y261 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 LITAF-211ENST00000572255 516 ntTSL 4 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 MPDU1-223ENST00000582151 728 ntBASIC13.46□□□□□ -0.25
FOXA2Q9Y261 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 MIR7706-201ENST00000613747 67 ntBASIC13.46□□□□□ -0.25
FOXA2Q9Y261 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA2Q9Y261 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
FOXA2Q9Y261 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
FOXA2Q9Y261 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
FOXA2Q9Y261 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
FOXA2Q9Y261 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
FOXA2Q9Y261 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC13.46□□□□□ -0.26
FOXA2Q9Y261 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC13.46□□□□□ -0.26
FOXA2Q9Y261 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms