Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 DEK-201ENST00000244776 1441 ntTSL 2 BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 MIR1247-201ENST00000408206 136 ntBASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 FAM21FP-201ENST00000426241 1131 ntBASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 BCRP2-202ENST00000447763 634 ntBASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 FO681548.1-201ENST00000455617 1132 ntBASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 BCRP6-201ENST00000510112 632 ntBASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 BCRP7-201ENST00000511549 544 ntBASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 TDH-203ENST00000531764 1110 ntBASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 ARL16-210ENST00000574938 751 ntTSL 2 BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF541Q9H0D2 KRT8P22-201ENST00000562317 1415 ntBASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 AL162726.2-201ENST00000438986 1017 ntBASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 RN7SL399P-201ENST00000471648 279 ntBASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 PARP8-206ENST00000503665 572 ntTSL 4 BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 AL022328.1-201ENST00000610050 478 ntBASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
ZNF541Q9H0D2 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 ACTG1P3-201ENST00000431775 1114 ntBASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 RPL7P3-201ENST00000441388 714 ntBASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 AL158212.4-201ENST00000624062 1286 ntBASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC19.59■□□□□ 0.73
ZNF541Q9H0D2 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 RHOQP1-201ENST00000555758 579 ntBASIC19.58■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms