Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.89■□□□□ 0.29
USP39Q53GS9 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
USP39Q53GS9 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.88■□□□□ 0.29
USP39Q53GS9 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 AC016396.2-201ENST00000562575 1417 ntBASIC16.88■□□□□ 0.29
USP39Q53GS9 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.88■□□□□ 0.29
USP39Q53GS9 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.88■□□□□ 0.29
USP39Q53GS9 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.88■□□□□ 0.29
USP39Q53GS9 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
USP39Q53GS9 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.88■□□□□ 0.29
USP39Q53GS9 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
USP39Q53GS9 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.88■□□□□ 0.29
USP39Q53GS9 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.88■□□□□ 0.29
USP39Q53GS9 AC027307.2-201ENST00000591252 911 ntBASIC16.88■□□□□ 0.29
USP39Q53GS9 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC16.88■□□□□ 0.29
USP39Q53GS9 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.88■□□□□ 0.29
USP39Q53GS9 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
USP39Q53GS9 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.88■□□□□ 0.29
USP39Q53GS9 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
USP39Q53GS9 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
USP39Q53GS9 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
USP39Q53GS9 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP39Q53GS9 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.87■□□□□ 0.29
USP39Q53GS9 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.87■□□□□ 0.29
USP39Q53GS9 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
USP39Q53GS9 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
USP39Q53GS9 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
USP39Q53GS9 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
USP39Q53GS9 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
USP39Q53GS9 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP39Q53GS9 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP39Q53GS9 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.87■□□□□ 0.29
USP39Q53GS9 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.87■□□□□ 0.29
USP39Q53GS9 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.87■□□□□ 0.29
USP39Q53GS9 AP000842.3-202ENST00000569238 1080 ntBASIC16.87■□□□□ 0.29
USP39Q53GS9 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.87■□□□□ 0.29
USP39Q53GS9 AP001350.2-201ENST00000625104 1094 ntBASIC16.87■□□□□ 0.29
USP39Q53GS9 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
USP39Q53GS9 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.87■□□□□ 0.29
USP39Q53GS9 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.87■□□□□ 0.29
USP39Q53GS9 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP39Q53GS9 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
USP39Q53GS9 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.87■□□□□ 0.29
USP39Q53GS9 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP39Q53GS9 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
USP39Q53GS9 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP39Q53GS9 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
USP39Q53GS9 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP39Q53GS9 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP39Q53GS9 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
USP39Q53GS9 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
USP39Q53GS9 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP39Q53GS9 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP39Q53GS9 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP39Q53GS9 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.87■□□□□ 0.29
USP39Q53GS9 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.87■□□□□ 0.29
USP39Q53GS9 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
USP39Q53GS9 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
USP39Q53GS9 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
USP39Q53GS9 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
USP39Q53GS9 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
USP39Q53GS9 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
USP39Q53GS9 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
USP39Q53GS9 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
USP39Q53GS9 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
USP39Q53GS9 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
USP39Q53GS9 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.86■□□□□ 0.29
USP39Q53GS9 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.86■□□□□ 0.29
USP39Q53GS9 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
USP39Q53GS9 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.86■□□□□ 0.29
USP39Q53GS9 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.86■□□□□ 0.29
USP39Q53GS9 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.86■□□□□ 0.29
USP39Q53GS9 AC241585.1-201ENST00000433527 519 ntBASIC16.86■□□□□ 0.29
USP39Q53GS9 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
USP39Q53GS9 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.86■□□□□ 0.29
USP39Q53GS9 AL031055.1-201ENST00000606362 631 ntBASIC16.86■□□□□ 0.29
USP39Q53GS9 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.86■□□□□ 0.29
USP39Q53GS9 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
USP39Q53GS9 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
USP39Q53GS9 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms