Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
COL4A4P53420 MYCLP2-201ENST00000449268 967 ntBASIC17.49■□□□□ 0.39
COL4A4P53420 GALT-202ENST00000450095 1280 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A4P53420 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A4P53420 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A4P53420 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A4P53420 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
COL4A4P53420 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A4P53420 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.49■□□□□ 0.39
COL4A4P53420 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A4P53420 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A4P53420 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A4P53420 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
COL4A4P53420 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.49■□□□□ 0.39
COL4A4P53420 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.49■□□□□ 0.39
COL4A4P53420 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A4P53420 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A4P53420 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
COL4A4P53420 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A4P53420 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A4P53420 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
COL4A4P53420 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A4P53420 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A4P53420 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A4P53420 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.48■□□□□ 0.39
COL4A4P53420 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC17.48■□□□□ 0.39
COL4A4P53420 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
COL4A4P53420 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC17.48■□□□□ 0.39
COL4A4P53420 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC17.48■□□□□ 0.39
COL4A4P53420 SERBP1P3-201ENST00000459980 809 ntBASIC17.48■□□□□ 0.39
COL4A4P53420 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A4P53420 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC17.48■□□□□ 0.39
COL4A4P53420 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC17.48■□□□□ 0.39
COL4A4P53420 MAX-210ENST00000555419 765 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A4P53420 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A4P53420 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A4P53420 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A4P53420 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A4P53420 AC018665.1-201ENST00000622927 1362 ntBASIC17.48■□□□□ 0.39
COL4A4P53420 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.48■□□□□ 0.39
COL4A4P53420 AL603756.1-201ENST00000606511 2163 ntBASIC17.48■□□□□ 0.39
COL4A4P53420 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.48■□□□□ 0.39
COL4A4P53420 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.48■□□□□ 0.39
COL4A4P53420 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COL4A4P53420 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A4P53420 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A4P53420 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A4P53420 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A4P53420 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.48■□□□□ 0.39
COL4A4P53420 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A4P53420 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A4P53420 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
COL4A4P53420 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A4P53420 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A4P53420 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A4P53420 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A4P53420 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A4P53420 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A4P53420 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.48■□□□□ 0.39
COL4A4P53420 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A4P53420 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COL4A4P53420 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A4P53420 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC17.48■□□□□ 0.39
COL4A4P53420 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A4P53420 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC17.48■□□□□ 0.39
COL4A4P53420 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC17.48■□□□□ 0.39
COL4A4P53420 MIR6787-201ENST00000616675 61 ntBASIC17.48■□□□□ 0.39
COL4A4P53420 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC17.48■□□□□ 0.39
COL4A4P53420 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A4P53420 CLK3P2-201ENST00000427566 1453 ntBASIC17.48■□□□□ 0.39
COL4A4P53420 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A4P53420 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A4P53420 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A4P53420 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
COL4A4P53420 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A4P53420 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A4P53420 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
COL4A4P53420 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.47■□□□□ 0.39
COL4A4P53420 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.47■□□□□ 0.39
COL4A4P53420 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A4P53420 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A4P53420 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A4P53420 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.47■□□□□ 0.39
COL4A4P53420 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC17.47■□□□□ 0.39
COL4A4P53420 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC17.47■□□□□ 0.39
COL4A4P53420 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.47■□□□□ 0.39
COL4A4P53420 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC17.47■□□□□ 0.39
COL4A4P53420 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
COL4A4P53420 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.47■□□□□ 0.39
COL4A4P53420 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.47■□□□□ 0.39
COL4A4P53420 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A4P53420 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A4P53420 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.47■□□□□ 0.39
COL4A4P53420 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC17.47■□□□□ 0.39
COL4A4P53420 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC17.47■□□□□ 0.39
COL4A4P53420 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.47■□□□□ 0.39
COL4A4P53420 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A4P53420 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A4P53420 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A4P53420 TECR-220ENST00000600083 1204 ntTSL 2 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms