Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.31■□□□□ 0.04
NKX2-2O95096 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX2-2O95096 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
NKX2-2O95096 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX2-2O95096 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX2-2O95096 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
NKX2-2O95096 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX2-2O95096 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC15.31■□□□□ 0.04
NKX2-2O95096 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NKX2-2O95096 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX2-2O95096 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NKX2-2O95096 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.31■□□□□ 0.04
NKX2-2O95096 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.31■□□□□ 0.04
NKX2-2O95096 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
NKX2-2O95096 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.31■□□□□ 0.04
NKX2-2O95096 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
NKX2-2O95096 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX2-2O95096 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC15.31■□□□□ 0.04
NKX2-2O95096 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX2-2O95096 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NKX2-2O95096 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX2-2O95096 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NKX2-2O95096 AC079328.2-201ENST00000561241 3354 ntBASIC15.3■□□□□ 0.04
NKX2-2O95096 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX2-2O95096 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
NKX2-2O95096 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX2-2O95096 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NKX2-2O95096 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX2-2O95096 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NKX2-2O95096 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX2-2O95096 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX2-2O95096 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX2-2O95096 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NKX2-2O95096 MIR574-201ENST00000385209 96 ntBASIC15.3■□□□□ 0.04
NKX2-2O95096 AL022342.1-201ENST00000400363 863 ntBASIC15.3■□□□□ 0.04
NKX2-2O95096 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NKX2-2O95096 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.3■□□□□ 0.04
NKX2-2O95096 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.3■□□□□ 0.04
NKX2-2O95096 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.3■□□□□ 0.04
NKX2-2O95096 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC15.3■□□□□ 0.04
NKX2-2O95096 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
NKX2-2O95096 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.3■□□□□ 0.04
NKX2-2O95096 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.3■□□□□ 0.04
NKX2-2O95096 KRT18P58-201ENST00000527480 1120 ntBASIC15.3■□□□□ 0.04
NKX2-2O95096 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
NKX2-2O95096 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
NKX2-2O95096 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.3■□□□□ 0.04
NKX2-2O95096 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.3■□□□□ 0.04
NKX2-2O95096 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.3■□□□□ 0.04
NKX2-2O95096 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
NKX2-2O95096 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.3■□□□□ 0.04
NKX2-2O95096 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.3■□□□□ 0.04
NKX2-2O95096 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.3■□□□□ 0.04
NKX2-2O95096 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
NKX2-2O95096 AL161645.1-201ENST00000622716 1255 ntBASIC15.3■□□□□ 0.04
NKX2-2O95096 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.3■□□□□ 0.04
NKX2-2O95096 DOC2GP-204ENST00000639052 2548 ntBASIC15.3■□□□□ 0.04
NKX2-2O95096 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX2-2O95096 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.29■□□□□ 0.04
NKX2-2O95096 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
NKX2-2O95096 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
NKX2-2O95096 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.29■□□□□ 0.04
NKX2-2O95096 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.29■□□□□ 0.04
NKX2-2O95096 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
NKX2-2O95096 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.29■□□□□ 0.04
NKX2-2O95096 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.29■□□□□ 0.04
NKX2-2O95096 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.29■□□□□ 0.04
NKX2-2O95096 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.29■□□□□ 0.04
NKX2-2O95096 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX2-2O95096 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX2-2O95096 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
NKX2-2O95096 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.29■□□□□ 0.04
NKX2-2O95096 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NKX2-2O95096 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX2-2O95096 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.29■□□□□ 0.04
NKX2-2O95096 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
NKX2-2O95096 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX2-2O95096 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX2-2O95096 AC002056.1-201ENST00000395613 760 ntBASIC15.29■□□□□ 0.04
NKX2-2O95096 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NKX2-2O95096 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.29■□□□□ 0.04
NKX2-2O95096 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.29■□□□□ 0.04
NKX2-2O95096 KRT18P34-201ENST00000488218 1270 ntBASIC15.29■□□□□ 0.04
NKX2-2O95096 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.29■□□□□ 0.04
NKX2-2O95096 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX2-2O95096 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
NKX2-2O95096 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
NKX2-2O95096 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.29■□□□□ 0.04
NKX2-2O95096 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX2-2O95096 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX2-2O95096 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX2-2O95096 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
NKX2-2O95096 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX2-2O95096 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
NKX2-2O95096 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NKX2-2O95096 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
NKX2-2O95096 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX2-2O95096 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.29■□□□□ 0.04
NKX2-2O95096 AC005622.1-201ENST00000636801 1703 ntBASIC15.29■□□□□ 0.04
NKX2-2O95096 AC016027.1-202ENST00000607927 1699 ntBASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms