Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 PARVG-202ENST00000415224 999 ntTSL 2 BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 AC106760.1-201ENST00000508690 800 ntBASIC15.18■□□□□ 0.02
CHD8Q9HCK8 AHRR-211ENST00000515206 462 ntTSL 5 BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
CHD8Q9HCK8 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 AC138951.2-201ENST00000623455 1161 ntBASIC15.17■□□□□ 0.02
CHD8Q9HCK8 CU633904.3-201ENST00000624042 1029 ntBASIC15.17■□□□□ 0.02
CHD8Q9HCK8 AHCYP2-201ENST00000430630 1300 ntBASIC15.17■□□□□ 0.02
CHD8Q9HCK8 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 CYP46A4P-201ENST00000414953 267 ntBASIC15.17■□□□□ 0.02
CHD8Q9HCK8 KRTAP19-9P-201ENST00000421795 191 ntBASIC15.17■□□□□ 0.02
CHD8Q9HCK8 C2orf27AP3-201ENST00000434123 579 ntBASIC15.17■□□□□ 0.02
CHD8Q9HCK8 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 AC141586.1-203ENST00000567242 366 ntBASIC15.17■□□□□ 0.02
CHD8Q9HCK8 AC120045.2-201ENST00000567334 178 ntBASIC15.17■□□□□ 0.02
CHD8Q9HCK8 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 AC133539.2-201ENST00000604757 467 ntBASIC15.17■□□□□ 0.02
CHD8Q9HCK8 AL354718.3-201ENST00000616414 581 ntBASIC15.17■□□□□ 0.02
CHD8Q9HCK8 AC005702.4-201ENST00000618393 416 ntBASIC15.17■□□□□ 0.02
CHD8Q9HCK8 CR382287.1-201ENST00000623954 586 ntBASIC15.17■□□□□ 0.02
CHD8Q9HCK8 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CHD8Q9HCK8 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 MIR3147-201ENST00000577811 66 ntBASIC15.16■□□□□ 0.02
CHD8Q9HCK8 RN7SL574P-201ENST00000581512 297 ntBASIC15.16■□□□□ 0.02
CHD8Q9HCK8 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CHD8Q9HCK8 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms