Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.76□□□□□ -0.05
MMP28Q9H239 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 FLJ16779-201ENST00000612722 7638 ntBASIC14.76□□□□□ -0.05
MMP28Q9H239 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
MMP28Q9H239 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.76□□□□□ -0.05
MMP28Q9H239 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
MMP28Q9H239 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
MMP28Q9H239 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC14.76□□□□□ -0.05
MMP28Q9H239 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 HES2-202ENST00000377836 507 ntTSL 2 BASIC14.76□□□□□ -0.05
MMP28Q9H239 DAP-202ENST00000432074 1048 ntTSL 2 BASIC14.76□□□□□ -0.05
MMP28Q9H239 AP003733.1-201ENST00000491725 852 ntBASIC14.76□□□□□ -0.05
MMP28Q9H239 KRT18P56-201ENST00000507275 550 ntBASIC14.76□□□□□ -0.05
MMP28Q9H239 FAM86EP-206ENST00000510506 987 ntBASIC14.76□□□□□ -0.05
MMP28Q9H239 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC14.76□□□□□ -0.05
MMP28Q9H239 AC083849.1-201ENST00000615227 514 ntBASIC14.76□□□□□ -0.05
MMP28Q9H239 AL121956.5-201ENST00000625261 221 ntBASIC14.76□□□□□ -0.05
MMP28Q9H239 DFFB-212ENST00000625756 649 ntTSL 5 BASIC14.76□□□□□ -0.05
MMP28Q9H239 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC14.76□□□□□ -0.05
MMP28Q9H239 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.76□□□□□ -0.05
MMP28Q9H239 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC14.76□□□□□ -0.05
MMP28Q9H239 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
MMP28Q9H239 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
MMP28Q9H239 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
MMP28Q9H239 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
MMP28Q9H239 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
MMP28Q9H239 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
MMP28Q9H239 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC14.76□□□□□ -0.05
MMP28Q9H239 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.76□□□□□ -0.05
MMP28Q9H239 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.75□□□□□ -0.05
MMP28Q9H239 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC14.75□□□□□ -0.05
MMP28Q9H239 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC14.75□□□□□ -0.05
MMP28Q9H239 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
MMP28Q9H239 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
MMP28Q9H239 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 KRT8P47-201ENST00000604727 1398 ntBASIC14.75□□□□□ -0.05
MMP28Q9H239 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
MMP28Q9H239 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
MMP28Q9H239 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14.75□□□□□ -0.05
MMP28Q9H239 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 COPS8-203ENST00000409334 794 ntTSL 5 BASIC14.75□□□□□ -0.05
MMP28Q9H239 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC14.75□□□□□ -0.05
MMP28Q9H239 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
MMP28Q9H239 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC14.75□□□□□ -0.05
MMP28Q9H239 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC14.75□□□□□ -0.05
MMP28Q9H239 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
MMP28Q9H239 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC14.75□□□□□ -0.05
MMP28Q9H239 VENTXP5-201ENST00000523979 775 ntBASIC14.75□□□□□ -0.05
MMP28Q9H239 PPOX-214ENST00000535223 664 ntTSL 3 BASIC14.75□□□□□ -0.05
MMP28Q9H239 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC14.75□□□□□ -0.05
MMP28Q9H239 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC14.75□□□□□ -0.05
MMP28Q9H239 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC14.75□□□□□ -0.05
MMP28Q9H239 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC14.75□□□□□ -0.05
MMP28Q9H239 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
MMP28Q9H239 AC093458.2-201ENST00000623150 629 ntBASIC14.75□□□□□ -0.05
MMP28Q9H239 CLN6-214ENST00000636314 442 ntTSL 3 BASIC14.75□□□□□ -0.05
MMP28Q9H239 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
MMP28Q9H239 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms