Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
TTC28Q96AY4 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TTC28Q96AY4 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.56■□□□□ 0.24
TTC28Q96AY4 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
TTC28Q96AY4 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
TTC28Q96AY4 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TTC28Q96AY4 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC16.56■□□□□ 0.24
TTC28Q96AY4 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.56■□□□□ 0.24
TTC28Q96AY4 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC16.56■□□□□ 0.24
TTC28Q96AY4 AC044849.1-201ENST00000519737 1188 ntBASIC16.56■□□□□ 0.24
TTC28Q96AY4 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.56■□□□□ 0.24
TTC28Q96AY4 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TTC28Q96AY4 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TTC28Q96AY4 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TTC28Q96AY4 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TTC28Q96AY4 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
TTC28Q96AY4 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TTC28Q96AY4 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
TTC28Q96AY4 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TTC28Q96AY4 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
TTC28Q96AY4 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.56■□□□□ 0.24
TTC28Q96AY4 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
TTC28Q96AY4 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
TTC28Q96AY4 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 HIST3H2BA-201ENST00000436555 524 ntBASIC16.55■□□□□ 0.24
TTC28Q96AY4 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
TTC28Q96AY4 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC16.55■□□□□ 0.24
TTC28Q96AY4 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.55■□□□□ 0.24
TTC28Q96AY4 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
TTC28Q96AY4 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC16.55■□□□□ 0.24
TTC28Q96AY4 MSRA-203ENST00000441698 788 ntTSL 2 BASIC16.55■□□□□ 0.24
TTC28Q96AY4 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 AL645939.5-201ENST00000606834 243 ntBASIC16.55■□□□□ 0.24
TTC28Q96AY4 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.55■□□□□ 0.24
TTC28Q96AY4 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.55■□□□□ 0.24
TTC28Q96AY4 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
TTC28Q96AY4 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
TTC28Q96AY4 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.55■□□□□ 0.24
TTC28Q96AY4 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TTC28Q96AY4 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.54■□□□□ 0.24
TTC28Q96AY4 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TTC28Q96AY4 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TTC28Q96AY4 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.54■□□□□ 0.24
TTC28Q96AY4 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC16.54■□□□□ 0.24
TTC28Q96AY4 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TTC28Q96AY4 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TTC28Q96AY4 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TTC28Q96AY4 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
TTC28Q96AY4 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC16.54■□□□□ 0.24
TTC28Q96AY4 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TTC28Q96AY4 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC16.54■□□□□ 0.24
TTC28Q96AY4 SERPINA13P-202ENST00000478994 924 ntBASIC16.54■□□□□ 0.24
TTC28Q96AY4 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TTC28Q96AY4 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC16.54■□□□□ 0.24
TTC28Q96AY4 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC16.54■□□□□ 0.24
TTC28Q96AY4 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TTC28Q96AY4 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
TTC28Q96AY4 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.54■□□□□ 0.24
TTC28Q96AY4 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TTC28Q96AY4 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
TTC28Q96AY4 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
TTC28Q96AY4 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TTC28Q96AY4 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TTC28Q96AY4 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TTC28Q96AY4 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TTC28Q96AY4 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TTC28Q96AY4 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TTC28Q96AY4 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC16.54■□□□□ 0.24
TTC28Q96AY4 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC16.54■□□□□ 0.24
TTC28Q96AY4 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC16.54■□□□□ 0.24
TTC28Q96AY4 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC16.54■□□□□ 0.24
TTC28Q96AY4 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TTC28Q96AY4 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
TTC28Q96AY4 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TTC28Q96AY4 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC16.53■□□□□ 0.24
TTC28Q96AY4 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TTC28Q96AY4 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC16.53■□□□□ 0.24
TTC28Q96AY4 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC16.53■□□□□ 0.24
TTC28Q96AY4 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TTC28Q96AY4 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
TTC28Q96AY4 DEF8-202ENST00000418391 852 ntTSL 2 BASIC16.53■□□□□ 0.24
TTC28Q96AY4 AC134915.1-201ENST00000426461 574 ntBASIC16.53■□□□□ 0.24
TTC28Q96AY4 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms