Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF549Q6P9A3 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF549Q6P9A3 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF549Q6P9A3 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF549Q6P9A3 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.53■□□□□ 0.24
ZNF549Q6P9A3 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF549Q6P9A3 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ZNF549Q6P9A3 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
ZNF549Q6P9A3 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.53■□□□□ 0.24
ZNF549Q6P9A3 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 MIR4751-201ENST00000578027 74 ntBASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.52■□□□□ 0.24
ZNF549Q6P9A3 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.52■□□□□ 0.23
ZNF549Q6P9A3 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.52■□□□□ 0.23
ZNF549Q6P9A3 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
ZNF549Q6P9A3 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.52■□□□□ 0.23
ZNF549Q6P9A3 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.52■□□□□ 0.23
ZNF549Q6P9A3 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
ZNF549Q6P9A3 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
ZNF549Q6P9A3 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
ZNF549Q6P9A3 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
ZNF549Q6P9A3 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
ZNF549Q6P9A3 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
ZNF549Q6P9A3 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
ZNF549Q6P9A3 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.23
ZNF549Q6P9A3 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
ZNF549Q6P9A3 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.52■□□□□ 0.23
ZNF549Q6P9A3 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
ZNF549Q6P9A3 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
ZNF549Q6P9A3 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.52■□□□□ 0.23
ZNF549Q6P9A3 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
ZNF549Q6P9A3 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 GPAA1P2-202ENST00000606848 1787 ntBASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 AC012569.1-201ENST00000591191 1524 ntBASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 VN2R19P-201ENST00000442399 1052 ntBASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 CXCL1P1-201ENST00000502804 216 ntBASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 AP001350.2-201ENST00000625104 1094 ntBASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.51■□□□□ 0.23
ZNF549Q6P9A3 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms