Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC22.73■■□□□ 1.23
MSH6P52701 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC22.73■■□□□ 1.23
MSH6P52701 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
MSH6P52701 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC22.73■■□□□ 1.23
MSH6P52701 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
MSH6P52701 AC025048.3-201ENST00000590609 569 ntBASIC22.73■■□□□ 1.23
MSH6P52701 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
MSH6P52701 AC005702.4-201ENST00000618393 416 ntBASIC22.73■■□□□ 1.23
MSH6P52701 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
MSH6P52701 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
MSH6P52701 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC22.73■■□□□ 1.23
MSH6P52701 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC22.73■■□□□ 1.23
MSH6P52701 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC22.73■■□□□ 1.23
MSH6P52701 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
MSH6P52701 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
MSH6P52701 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
MSH6P52701 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
MSH6P52701 AC133963.1-201ENST00000504166 1679 ntBASIC22.72■■□□□ 1.23
MSH6P52701 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
MSH6P52701 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC22.72■■□□□ 1.23
MSH6P52701 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC22.72■■□□□ 1.23
MSH6P52701 ACTG1P3-201ENST00000431775 1114 ntBASIC22.72■■□□□ 1.23
MSH6P52701 NME4-207ENST00000450036 985 ntTSL 3 BASIC22.72■■□□□ 1.23
MSH6P52701 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC22.72■■□□□ 1.23
MSH6P52701 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC22.72■■□□□ 1.23
MSH6P52701 TDH-203ENST00000531764 1110 ntBASIC22.72■■□□□ 1.23
MSH6P52701 CU634019.7-201ENST00000624153 1185 ntBASIC22.72■■□□□ 1.23
MSH6P52701 FP236241.2-201ENST00000624906 1185 ntBASIC22.72■■□□□ 1.23
MSH6P52701 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC22.72■■□□□ 1.23
MSH6P52701 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
MSH6P52701 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC22.72■■□□□ 1.23
MSH6P52701 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
MSH6P52701 KRT8P22-201ENST00000562317 1415 ntBASIC22.72■■□□□ 1.23
MSH6P52701 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH6P52701 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
MSH6P52701 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
MSH6P52701 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC22.71■■□□□ 1.23
MSH6P52701 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC22.71■■□□□ 1.23
MSH6P52701 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC22.71■■□□□ 1.23
MSH6P52701 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
MSH6P52701 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC22.71■■□□□ 1.23
MSH6P52701 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH6P52701 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH6P52701 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH6P52701 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH6P52701 GZMB-202ENST00000382540 816 ntTSL 5 BASIC22.71■■□□□ 1.23
MSH6P52701 AL442647.2-201ENST00000429864 857 ntBASIC22.71■■□□□ 1.23
MSH6P52701 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC22.71■■□□□ 1.23
MSH6P52701 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC22.71■■□□□ 1.23
MSH6P52701 C2orf69P2-201ENST00000562032 1123 ntBASIC22.71■■□□□ 1.23
MSH6P52701 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC22.71■■□□□ 1.23
MSH6P52701 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC22.71■■□□□ 1.23
MSH6P52701 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC22.71■■□□□ 1.23
MSH6P52701 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
MSH6P52701 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC22.71■■□□□ 1.23
MSH6P52701 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH6P52701 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
MSH6P52701 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
MSH6P52701 AC006538.1-201ENST00000567905 1585 ntBASIC22.71■■□□□ 1.23
MSH6P52701 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC22.71■■□□□ 1.23
MSH6P52701 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC22.7■■□□□ 1.23
MSH6P52701 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.23
MSH6P52701 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC22.7■■□□□ 1.23
MSH6P52701 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
MSH6P52701 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC22.7■■□□□ 1.22
MSH6P52701 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
MSH6P52701 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC22.7■■□□□ 1.22
MSH6P52701 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC22.7■■□□□ 1.22
MSH6P52701 AC093724.1-201ENST00000448659 1027 ntBASIC22.7■■□□□ 1.22
MSH6P52701 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
MSH6P52701 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC22.7■■□□□ 1.22
MSH6P52701 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC22.7■■□□□ 1.22
MSH6P52701 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
MSH6P52701 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC22.7■■□□□ 1.22
MSH6P52701 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC22.7■■□□□ 1.22
MSH6P52701 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
MSH6P52701 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
MSH6P52701 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
MSH6P52701 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
MSH6P52701 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
MSH6P52701 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
MSH6P52701 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
MSH6P52701 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC22.69■■□□□ 1.22
MSH6P52701 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC22.69■■□□□ 1.22
MSH6P52701 AP000812.2-201ENST00000538934 718 ntBASIC22.69■■□□□ 1.22
MSH6P52701 RIT1-205ENST00000539040 919 ntTSL 2 BASIC22.69■■□□□ 1.22
MSH6P52701 AC106872.11-201ENST00000605838 421 ntBASIC22.69■■□□□ 1.22
MSH6P52701 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
MSH6P52701 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC22.69■■□□□ 1.22
MSH6P52701 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
MSH6P52701 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
MSH6P52701 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
MSH6P52701 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
MSH6P52701 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC22.68■■□□□ 1.22
MSH6P52701 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
MSH6P52701 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC22.68■■□□□ 1.22
MSH6P52701 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
MSH6P52701 VMO1-203ENST00000416307 712 ntTSL 2 BASIC22.68■■□□□ 1.22
MSH6P52701 YBX1P6-201ENST00000442962 1002 ntBASIC22.68■■□□□ 1.22
MSH6P52701 BCRP2-202ENST00000447763 634 ntBASIC22.68■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms