Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
TRIM4Q9C037 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM4Q9C037 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
TRIM4Q9C037 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
TRIM4Q9C037 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
TRIM4Q9C037 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
TRIM4Q9C037 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM4Q9C037 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM4Q9C037 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.77■□□□□ 0.28
TRIM4Q9C037 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.77■□□□□ 0.28
TRIM4Q9C037 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM4Q9C037 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM4Q9C037 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.77■□□□□ 0.28
TRIM4Q9C037 HNRNPDP1-201ENST00000439535 754 ntBASIC16.77■□□□□ 0.28
TRIM4Q9C037 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
TRIM4Q9C037 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.77■□□□□ 0.28
TRIM4Q9C037 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.77■□□□□ 0.28
TRIM4Q9C037 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM4Q9C037 AC096582.2-201ENST00000510860 516 ntBASIC16.77■□□□□ 0.28
TRIM4Q9C037 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.77■□□□□ 0.28
TRIM4Q9C037 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM4Q9C037 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.77■□□□□ 0.28
TRIM4Q9C037 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.77■□□□□ 0.28
TRIM4Q9C037 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM4Q9C037 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM4Q9C037 PAUPAR-201ENST00000630360 2965 ntBASIC16.77■□□□□ 0.28
TRIM4Q9C037 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.77■□□□□ 0.28
TRIM4Q9C037 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM4Q9C037 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.77■□□□□ 0.27
TRIM4Q9C037 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
TRIM4Q9C037 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM4Q9C037 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM4Q9C037 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.77■□□□□ 0.27
TRIM4Q9C037 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM4Q9C037 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.77■□□□□ 0.27
TRIM4Q9C037 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM4Q9C037 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM4Q9C037 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.77■□□□□ 0.27
TRIM4Q9C037 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM4Q9C037 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM4Q9C037 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM4Q9C037 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
TRIM4Q9C037 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM4Q9C037 AL138688.1-201ENST00000624851 1594 ntBASIC16.77■□□□□ 0.27
TRIM4Q9C037 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM4Q9C037 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM4Q9C037 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM4Q9C037 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM4Q9C037 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM4Q9C037 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM4Q9C037 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM4Q9C037 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM4Q9C037 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM4Q9C037 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM4Q9C037 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM4Q9C037 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM4Q9C037 IGHGP-201ENST00000390555 1178 ntBASIC16.76■□□□□ 0.27
TRIM4Q9C037 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM4Q9C037 DNAJB3-202ENST00000449667 1266 ntBASIC16.76■□□□□ 0.27
TRIM4Q9C037 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM4Q9C037 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.76■□□□□ 0.27
TRIM4Q9C037 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM4Q9C037 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.76■□□□□ 0.27
TRIM4Q9C037 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.76■□□□□ 0.27
TRIM4Q9C037 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
TRIM4Q9C037 AL355877.3-201ENST00000622820 899 ntBASIC16.76■□□□□ 0.27
TRIM4Q9C037 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM4Q9C037 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM4Q9C037 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM4Q9C037 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM4Q9C037 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM4Q9C037 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM4Q9C037 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM4Q9C037 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM4Q9C037 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM4Q9C037 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM4Q9C037 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.75■□□□□ 0.27
TRIM4Q9C037 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
TRIM4Q9C037 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
TRIM4Q9C037 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
TRIM4Q9C037 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM4Q9C037 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
TRIM4Q9C037 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM4Q9C037 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.75■□□□□ 0.27
TRIM4Q9C037 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM4Q9C037 HLA-J-201ENST00000462773 1622 ntBASIC16.75■□□□□ 0.27
TRIM4Q9C037 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM4Q9C037 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM4Q9C037 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM4Q9C037 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.75■□□□□ 0.27
TRIM4Q9C037 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM4Q9C037 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.75■□□□□ 0.27
TRIM4Q9C037 HTR5BP-201ENST00000430851 1154 ntBASIC16.75■□□□□ 0.27
TRIM4Q9C037 METTL21AP1-201ENST00000438852 635 ntBASIC16.75■□□□□ 0.27
TRIM4Q9C037 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.75■□□□□ 0.27
TRIM4Q9C037 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
TRIM4Q9C037 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
TRIM4Q9C037 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.75■□□□□ 0.27
TRIM4Q9C037 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM4Q9C037 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms