Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 AC006449.5-201ENST00000610658 2098 ntBASIC12.89□□□□□ -0.35
CCDC140Q96MF4 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 SSR1P1-201ENST00000407630 814 ntBASIC12.88□□□□□ -0.35
CCDC140Q96MF4 KRT18P3-201ENST00000451602 1288 ntBASIC12.88□□□□□ -0.35
CCDC140Q96MF4 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 THTPA-204ENST00000554970 569 ntTSL 4 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 THTPA-206ENST00000556015 535 ntTSL 3 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 AC021097.1-201ENST00000607902 574 ntBASIC12.88□□□□□ -0.35
CCDC140Q96MF4 MED16-214ENST00000617672 554 ntTSL 5 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 CAND2-206ENST00000626378 333 ntTSL 5 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CCDC140Q96MF4 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 PCDH8P1-201ENST00000428983 2773 ntBASIC12.87□□□□□ -0.35
CCDC140Q96MF4 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 DPM2-202ENST00000373110 738 ntTSL 2 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 PMS2P4-201ENST00000412466 1052 ntBASIC12.87□□□□□ -0.35
CCDC140Q96MF4 HNRNPA1P28-201ENST00000424481 961 ntBASIC12.87□□□□□ -0.35
CCDC140Q96MF4 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 AC109635.5-201ENST00000533593 962 ntBASIC12.87□□□□□ -0.35
CCDC140Q96MF4 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 PDPK2P-202ENST00000562415 1191 ntBASIC12.87□□□□□ -0.35
CCDC140Q96MF4 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 AL009183.1-201ENST00000603760 355 ntBASIC12.87□□□□□ -0.35
CCDC140Q96MF4 AL513190.1-201ENST00000621254 727 ntBASIC12.87□□□□□ -0.35
CCDC140Q96MF4 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 AC092919.2-201ENST00000623631 1645 ntBASIC12.87□□□□□ -0.35
CCDC140Q96MF4 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms