Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 AC046158.3-201ENST00000624947 2558 ntBASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 RHOQP3-201ENST00000437982 621 ntBASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 FAM185BP-201ENST00000443595 716 ntBASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 DNAJB3-201ENST00000446806 729 ntBASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 AC107918.2-201ENST00000530817 355 ntBASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 AC023141.13-201ENST00000604991 943 ntBASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 FLJ38576-201ENST00000623820 2459 ntBASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC19.87■□□□□ 0.77
CHMP4CQ96CF2 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 TOP3BP1-201ENST00000420768 1380 ntBASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 MCCD1P2-201ENST00000423228 335 ntBASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 PDPK2P-202ENST00000562415 1191 ntBASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP4CQ96CF2 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 AC124067.4-201ENST00000519691 2379 ntBASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 AC211486.1-202ENST00000416371 468 ntBASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 FAM58CP-201ENST00000435741 640 ntBASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 CEND1P1-201ENST00000451006 455 ntBASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 AC211476.1-201ENST00000503899 468 ntBASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 AL031432.2-201ENST00000566714 459 ntBASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 AC005829.1-201ENST00000570002 483 ntBASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 AL928711.1-201ENST00000570165 459 ntBASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms