Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TTC28Q96AY4 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.59■□□□□ 0.25
TTC28Q96AY4 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC16.59■□□□□ 0.25
TTC28Q96AY4 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.59■□□□□ 0.25
TTC28Q96AY4 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TTC28Q96AY4 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.58■□□□□ 0.25
TTC28Q96AY4 FOS-202ENST00000535987 1402 ntTSL 2 BASIC16.58■□□□□ 0.25
TTC28Q96AY4 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
TTC28Q96AY4 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
TTC28Q96AY4 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
TTC28Q96AY4 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TTC28Q96AY4 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC16.58■□□□□ 0.25
TTC28Q96AY4 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
TTC28Q96AY4 CNN2P8-201ENST00000421872 913 ntBASIC16.58■□□□□ 0.25
TTC28Q96AY4 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.58■□□□□ 0.25
TTC28Q96AY4 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.58■□□□□ 0.25
TTC28Q96AY4 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
TTC28Q96AY4 AC120045.2-201ENST00000567334 178 ntBASIC16.58■□□□□ 0.25
TTC28Q96AY4 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.58■□□□□ 0.25
TTC28Q96AY4 AL139327.4-201ENST00000612362 153 ntBASIC16.58■□□□□ 0.25
TTC28Q96AY4 AP001527.2-201ENST00000614441 631 ntBASIC16.58■□□□□ 0.25
TTC28Q96AY4 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.58■□□□□ 0.25
TTC28Q96AY4 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TTC28Q96AY4 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TTC28Q96AY4 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TTC28Q96AY4 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.58■□□□□ 0.24
TTC28Q96AY4 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
TTC28Q96AY4 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TTC28Q96AY4 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.58■□□□□ 0.24
TTC28Q96AY4 AL139008.1-201ENST00000437894 228 ntBASIC16.58■□□□□ 0.24
TTC28Q96AY4 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC16.58■□□□□ 0.24
TTC28Q96AY4 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
TTC28Q96AY4 AC022137.2-201ENST00000503482 481 ntBASIC16.58■□□□□ 0.24
TTC28Q96AY4 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.58■□□□□ 0.24
TTC28Q96AY4 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TTC28Q96AY4 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC16.58■□□□□ 0.24
TTC28Q96AY4 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.58■□□□□ 0.24
TTC28Q96AY4 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.58■□□□□ 0.24
TTC28Q96AY4 AL049840.4-201ENST00000602422 811 ntBASIC16.58■□□□□ 0.24
TTC28Q96AY4 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TTC28Q96AY4 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.58■□□□□ 0.24
TTC28Q96AY4 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC16.58■□□□□ 0.24
TTC28Q96AY4 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TTC28Q96AY4 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TTC28Q96AY4 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TTC28Q96AY4 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TTC28Q96AY4 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TTC28Q96AY4 AC135776.1-201ENST00000319817 2481 ntBASIC16.57■□□□□ 0.24
TTC28Q96AY4 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
TTC28Q96AY4 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TTC28Q96AY4 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC16.57■□□□□ 0.24
TTC28Q96AY4 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
TTC28Q96AY4 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC16.57■□□□□ 0.24
TTC28Q96AY4 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC16.57■□□□□ 0.24
TTC28Q96AY4 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TTC28Q96AY4 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TTC28Q96AY4 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC16.57■□□□□ 0.24
TTC28Q96AY4 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC16.57■□□□□ 0.24
TTC28Q96AY4 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.57■□□□□ 0.24
TTC28Q96AY4 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC16.57■□□□□ 0.24
TTC28Q96AY4 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.57■□□□□ 0.24
TTC28Q96AY4 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TTC28Q96AY4 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TTC28Q96AY4 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TTC28Q96AY4 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
TTC28Q96AY4 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TTC28Q96AY4 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
TTC28Q96AY4 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
TTC28Q96AY4 CTBP2P4-201ENST00000513884 920 ntBASIC16.57■□□□□ 0.24
TTC28Q96AY4 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC16.57■□□□□ 0.24
TTC28Q96AY4 CLUHP6-201ENST00000580789 941 ntBASIC16.57■□□□□ 0.24
TTC28Q96AY4 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
TTC28Q96AY4 FTLP5-201ENST00000586853 534 ntBASIC16.57■□□□□ 0.24
TTC28Q96AY4 BRI3BPP1-201ENST00000594224 787 ntBASIC16.57■□□□□ 0.24
TTC28Q96AY4 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.57■□□□□ 0.24
TTC28Q96AY4 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
TTC28Q96AY4 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.57■□□□□ 0.24
TTC28Q96AY4 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TTC28Q96AY4 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.56■□□□□ 0.24
TTC28Q96AY4 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TTC28Q96AY4 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC16.56■□□□□ 0.24
TTC28Q96AY4 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.56■□□□□ 0.24
TTC28Q96AY4 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.56■□□□□ 0.24
TTC28Q96AY4 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TTC28Q96AY4 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TTC28Q96AY4 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TTC28Q96AY4 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TTC28Q96AY4 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
TTC28Q96AY4 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TTC28Q96AY4 NUP210P1-202ENST00000504322 710 ntBASIC16.56■□□□□ 0.24
TTC28Q96AY4 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC16.56■□□□□ 0.24
TTC28Q96AY4 AC138649.2-201ENST00000615886 705 ntBASIC16.56■□□□□ 0.24
TTC28Q96AY4 AC145423.3-201ENST00000615987 467 ntBASIC16.56■□□□□ 0.24
TTC28Q96AY4 YRDCP1-201ENST00000621419 643 ntBASIC16.56■□□□□ 0.24
TTC28Q96AY4 AL158212.4-201ENST00000624062 1286 ntBASIC16.56■□□□□ 0.24
TTC28Q96AY4 AC005252.2-201ENST00000624630 1141 ntBASIC16.56■□□□□ 0.24
TTC28Q96AY4 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TTC28Q96AY4 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TTC28Q96AY4 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TTC28Q96AY4 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms