Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
EPHB3P54753 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.32■□□□□ 0.36
EPHB3P54753 FAM207CP-201ENST00000443486 507 ntBASIC17.32■□□□□ 0.36
EPHB3P54753 UGT1A2P-201ENST00000454886 866 ntBASIC17.32■□□□□ 0.36
EPHB3P54753 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
EPHB3P54753 RNA5SP410-201ENST00000516285 106 ntBASIC17.32■□□□□ 0.36
EPHB3P54753 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.32■□□□□ 0.36
EPHB3P54753 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.32■□□□□ 0.36
EPHB3P54753 AC190387.1-201ENST00000551683 408 ntBASIC17.32■□□□□ 0.36
EPHB3P54753 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
EPHB3P54753 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
EPHB3P54753 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.32■□□□□ 0.36
EPHB3P54753 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
EPHB3P54753 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.32■□□□□ 0.36
EPHB3P54753 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.31■□□□□ 0.36
EPHB3P54753 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
EPHB3P54753 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
EPHB3P54753 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
EPHB3P54753 AC100757.3-201ENST00000622361 1406 ntBASIC17.31■□□□□ 0.36
EPHB3P54753 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
EPHB3P54753 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
EPHB3P54753 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
EPHB3P54753 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
EPHB3P54753 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
EPHB3P54753 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.31■□□□□ 0.36
EPHB3P54753 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
EPHB3P54753 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
EPHB3P54753 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
EPHB3P54753 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
EPHB3P54753 RAC2-204ENST00000406508 893 ntTSL 5 BASIC17.31■□□□□ 0.36
EPHB3P54753 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.31■□□□□ 0.36
EPHB3P54753 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
EPHB3P54753 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.31■□□□□ 0.36
EPHB3P54753 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.31■□□□□ 0.36
EPHB3P54753 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.31■□□□□ 0.36
EPHB3P54753 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.31■□□□□ 0.36
EPHB3P54753 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.31■□□□□ 0.36
EPHB3P54753 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.31■□□□□ 0.36
EPHB3P54753 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.31■□□□□ 0.36
EPHB3P54753 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC17.31■□□□□ 0.36
EPHB3P54753 AC020765.3-201ENST00000613051 740 ntBASIC17.31■□□□□ 0.36
EPHB3P54753 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.31■□□□□ 0.36
EPHB3P54753 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
EPHB3P54753 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
EPHB3P54753 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
EPHB3P54753 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
EPHB3P54753 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
EPHB3P54753 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
EPHB3P54753 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.31■□□□□ 0.36
EPHB3P54753 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
EPHB3P54753 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
EPHB3P54753 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
EPHB3P54753 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
EPHB3P54753 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.31■□□□□ 0.36
EPHB3P54753 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
EPHB3P54753 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
EPHB3P54753 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
EPHB3P54753 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
EPHB3P54753 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
EPHB3P54753 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
EPHB3P54753 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.3■□□□□ 0.36
EPHB3P54753 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.3■□□□□ 0.36
EPHB3P54753 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
EPHB3P54753 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
EPHB3P54753 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
EPHB3P54753 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
EPHB3P54753 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.3■□□□□ 0.36
EPHB3P54753 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.3■□□□□ 0.36
EPHB3P54753 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.3■□□□□ 0.36
EPHB3P54753 MAX-210ENST00000555419 765 ntTSL 5 BASIC17.3■□□□□ 0.36
EPHB3P54753 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.3■□□□□ 0.36
EPHB3P54753 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.3■□□□□ 0.36
EPHB3P54753 LINC02560-201ENST00000596379 459 ntBASIC17.3■□□□□ 0.36
EPHB3P54753 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
EPHB3P54753 AL590560.3-201ENST00000623350 461 ntBASIC17.3■□□□□ 0.36
EPHB3P54753 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.3■□□□□ 0.36
EPHB3P54753 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
EPHB3P54753 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.3■□□□□ 0.36
EPHB3P54753 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
EPHB3P54753 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
EPHB3P54753 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.3■□□□□ 0.36
EPHB3P54753 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
EPHB3P54753 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
EPHB3P54753 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
EPHB3P54753 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.3■□□□□ 0.36
EPHB3P54753 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
EPHB3P54753 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
EPHB3P54753 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
EPHB3P54753 FZD10-202ENST00000539839 3282 ntBASIC17.29■□□□□ 0.36
EPHB3P54753 AC139713.2-201ENST00000641328 2723 ntBASIC17.29■□□□□ 0.36
EPHB3P54753 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.29■□□□□ 0.36
EPHB3P54753 AL645728.1-201ENST00000366221 2101 ntBASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms