Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL18A1P39060 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
COL18A1P39060 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
COL18A1P39060 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC21.57■■□□□ 1.04
COL18A1P39060 AL442647.2-201ENST00000429864 857 ntBASIC21.57■■□□□ 1.04
COL18A1P39060 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL18A1P39060 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC21.57■■□□□ 1.04
COL18A1P39060 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
COL18A1P39060 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL18A1P39060 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC21.57■■□□□ 1.04
COL18A1P39060 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC21.57■■□□□ 1.04
COL18A1P39060 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC21.57■■□□□ 1.04
COL18A1P39060 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC21.57■■□□□ 1.04
COL18A1P39060 AC233724.13-201ENST00000598383 410 ntBASIC21.57■■□□□ 1.04
COL18A1P39060 AL365330.1-201ENST00000607459 531 ntBASIC21.57■■□□□ 1.04
COL18A1P39060 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC21.57■■□□□ 1.04
COL18A1P39060 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC21.57■■□□□ 1.04
COL18A1P39060 PCGF3-213ENST00000620529 1899 ntBASIC21.57■■□□□ 1.04
COL18A1P39060 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC21.57■■□□□ 1.04
COL18A1P39060 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
COL18A1P39060 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL18A1P39060 AL603756.1-201ENST00000606511 2163 ntBASIC21.57■■□□□ 1.04
COL18A1P39060 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL18A1P39060 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL18A1P39060 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC21.56■■□□□ 1.04
COL18A1P39060 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL18A1P39060 MIR1908-201ENST00000410394 80 ntBASIC21.56■■□□□ 1.04
COL18A1P39060 AC099336.1-201ENST00000417053 1171 ntBASIC21.56■■□□□ 1.04
COL18A1P39060 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
COL18A1P39060 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL18A1P39060 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
COL18A1P39060 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL18A1P39060 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC21.56■■□□□ 1.04
COL18A1P39060 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL18A1P39060 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL18A1P39060 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL18A1P39060 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
COL18A1P39060 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC21.56■■□□□ 1.04
COL18A1P39060 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL18A1P39060 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL18A1P39060 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL18A1P39060 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC21.56■■□□□ 1.04
COL18A1P39060 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC21.56■■□□□ 1.04
COL18A1P39060 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC21.56■■□□□ 1.04
COL18A1P39060 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC21.56■■□□□ 1.04
COL18A1P39060 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC21.56■■□□□ 1.04
COL18A1P39060 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC21.56■■□□□ 1.04
COL18A1P39060 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC21.56■■□□□ 1.04
COL18A1P39060 AC124283.3-201ENST00000570869 594 ntBASIC21.56■■□□□ 1.04
COL18A1P39060 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
COL18A1P39060 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL18A1P39060 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC21.56■■□□□ 1.04
COL18A1P39060 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC21.56■■□□□ 1.04
COL18A1P39060 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
COL18A1P39060 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL18A1P39060 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL18A1P39060 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC21.55■■□□□ 1.04
COL18A1P39060 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC21.55■■□□□ 1.04
COL18A1P39060 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
COL18A1P39060 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
COL18A1P39060 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC21.55■■□□□ 1.04
COL18A1P39060 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL18A1P39060 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC21.55■■□□□ 1.04
COL18A1P39060 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL18A1P39060 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
COL18A1P39060 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL18A1P39060 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
COL18A1P39060 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL18A1P39060 BOLA2P3-201ENST00000404566 256 ntBASIC21.55■■□□□ 1.04
COL18A1P39060 FO393414.2-201ENST00000405153 598 ntBASIC21.55■■□□□ 1.04
COL18A1P39060 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC21.55■■□□□ 1.04
COL18A1P39060 AL162726.2-201ENST00000438986 1017 ntBASIC21.55■■□□□ 1.04
COL18A1P39060 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC21.55■■□□□ 1.04
COL18A1P39060 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC21.55■■□□□ 1.04
COL18A1P39060 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC21.55■■□□□ 1.04
COL18A1P39060 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC21.55■■□□□ 1.04
COL18A1P39060 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL18A1P39060 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC21.55■■□□□ 1.04
COL18A1P39060 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL18A1P39060 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
COL18A1P39060 NEFHP1-201ENST00000412845 2629 ntBASIC21.55■■□□□ 1.04
COL18A1P39060 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
COL18A1P39060 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
COL18A1P39060 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL18A1P39060 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL18A1P39060 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.55■■□□□ 1.04
COL18A1P39060 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC21.54■■□□□ 1.04
COL18A1P39060 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL18A1P39060 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC21.54■■□□□ 1.04
COL18A1P39060 GGT3P-204ENST00000453783 1664 ntBASIC21.54■■□□□ 1.04
COL18A1P39060 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC21.54■■□□□ 1.04
COL18A1P39060 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC21.54■■□□□ 1.04
COL18A1P39060 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
COL18A1P39060 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC21.54■■□□□ 1.04
COL18A1P39060 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC21.54■■□□□ 1.04
COL18A1P39060 AL355994.2-201ENST00000447882 704 ntBASIC21.54■■□□□ 1.04
COL18A1P39060 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
COL18A1P39060 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL18A1P39060 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC21.54■■□□□ 1.04
COL18A1P39060 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms