Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 MIR346-201ENST00000362234 95 ntBASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 Z92544.3-201ENST00000624747 417 ntBASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLCF1Q9UBD9 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 PC-204ENST00000524491 1714 ntTSL 2 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 AL391256.1-201ENST00000443260 1855 ntBASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 RBPMS2P1-201ENST00000437762 623 ntBASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 SPDYE14P-201ENST00000442619 822 ntBASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 FAM86GP-201ENST00000448322 971 ntBASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 SLC25A39P2-201ENST00000537614 270 ntBASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 NKG7-205ENST00000600427 520 ntTSL 3 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLCF1Q9UBD9 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CLCF1Q9UBD9 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLCF1Q9UBD9 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLCF1Q9UBD9 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLCF1Q9UBD9 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLCF1Q9UBD9 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLCF1Q9UBD9 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLCF1Q9UBD9 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLCF1Q9UBD9 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLCF1Q9UBD9 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLCF1Q9UBD9 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
CLCF1Q9UBD9 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.79□□□□□ -0.04
CLCF1Q9UBD9 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLCF1Q9UBD9 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms