Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 CNN2P2-201ENST00000443536 909 ntBASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 CNN2P3-201ENST00000450201 906 ntBASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 GAPDHP21-201ENST00000450301 1010 ntBASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 AP002490.2-201ENST00000524791 560 ntBASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 AL136317.3-201ENST00000618497 906 ntBASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 TUBB3P1-201ENST00000405796 1332 ntBASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 AL391256.1-201ENST00000443260 1855 ntBASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 AMT-206ENST00000458307 1860 ntTSL 2 BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 EDF1-203ENST00000371649 790 ntTSL 2 BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 BAD-202ENST00000394531 631 ntTSL 3 BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 AC069335.1-201ENST00000489972 472 ntBASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 LINC00895-201ENST00000629028 1637 ntBASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SH3RF1Q7Z6J0 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 BSG-215ENST00000618006 1329 ntTSL 2 BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 AC002056.1-201ENST00000395613 760 ntBASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 HNRNPA1P40-201ENST00000426371 1278 ntBASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 AL592309.1-201ENST00000443127 649 ntBASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 SPDYE11-202ENST00000450699 704 ntBASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 SPDYE9P-201ENST00000570642 692 ntBASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 SPDYE10P-202ENST00000612005 668 ntBASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 SPDYE8P-202ENST00000612377 668 ntBASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC19.05■□□□□ 0.64
SH3RF1Q7Z6J0 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 RAC2-204ENST00000406508 893 ntTSL 5 BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
SH3RF1Q7Z6J0 AP005018.1-201ENST00000525475 301 ntBASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms