Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
RFC3P40938 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFC3P40938 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
RFC3P40938 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
RFC3P40938 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RFC3P40938 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFC3P40938 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RFC3P40938 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC15.3■□□□□ 0.04
RFC3P40938 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RFC3P40938 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.3■□□□□ 0.04
RFC3P40938 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
RFC3P40938 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RFC3P40938 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC15.3■□□□□ 0.04
RFC3P40938 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.3■□□□□ 0.04
RFC3P40938 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFC3P40938 AL592309.1-201ENST00000443127 649 ntBASIC15.3■□□□□ 0.04
RFC3P40938 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.3■□□□□ 0.04
RFC3P40938 AC023141.5-201ENST00000458585 616 ntBASIC15.3■□□□□ 0.04
RFC3P40938 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC15.3■□□□□ 0.04
RFC3P40938 AC079140.1-201ENST00000508039 487 ntBASIC15.3■□□□□ 0.04
RFC3P40938 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.3■□□□□ 0.04
RFC3P40938 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.3■□□□□ 0.04
RFC3P40938 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC15.3■□□□□ 0.04
RFC3P40938 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.3■□□□□ 0.04
RFC3P40938 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RFC3P40938 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
RFC3P40938 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.3■□□□□ 0.04
RFC3P40938 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.3■□□□□ 0.04
RFC3P40938 AC092068.3-201ENST00000587894 2016 ntBASIC15.3■□□□□ 0.04
RFC3P40938 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RFC3P40938 AL009183.1-201ENST00000603760 355 ntBASIC15.3■□□□□ 0.04
RFC3P40938 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFC3P40938 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFC3P40938 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.3■□□□□ 0.04
RFC3P40938 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.3■□□□□ 0.04
RFC3P40938 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFC3P40938 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.3■□□□□ 0.04
RFC3P40938 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
RFC3P40938 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFC3P40938 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFC3P40938 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
RFC3P40938 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFC3P40938 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFC3P40938 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFC3P40938 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.29■□□□□ 0.04
RFC3P40938 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC15.29■□□□□ 0.04
RFC3P40938 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.29■□□□□ 0.04
RFC3P40938 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 AL627223.1-201ENST00000416693 442 ntBASIC15.29■□□□□ 0.04
RFC3P40938 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.29■□□□□ 0.04
RFC3P40938 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.29■□□□□ 0.04
RFC3P40938 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
RFC3P40938 RARRES2P8-201ENST00000566335 367 ntBASIC15.29■□□□□ 0.04
RFC3P40938 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.29■□□□□ 0.04
RFC3P40938 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
RFC3P40938 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFC3P40938 AC131009.4-201ENST00000624048 1740 ntBASIC15.29■□□□□ 0.04
RFC3P40938 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFC3P40938 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFC3P40938 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.28■□□□□ 0.04
RFC3P40938 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFC3P40938 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.28■□□□□ 0.04
RFC3P40938 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFC3P40938 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFC3P40938 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC15.28■□□□□ 0.04
RFC3P40938 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFC3P40938 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFC3P40938 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFC3P40938 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFC3P40938 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.28■□□□□ 0.04
RFC3P40938 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.28■□□□□ 0.04
RFC3P40938 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.28■□□□□ 0.04
RFC3P40938 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.28■□□□□ 0.04
RFC3P40938 FAM86C2P-203ENST00000528684 1004 ntBASIC15.28■□□□□ 0.04
RFC3P40938 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC15.28■□□□□ 0.04
RFC3P40938 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.28■□□□□ 0.04
RFC3P40938 AC243562.1-201ENST00000560672 389 ntBASIC15.28■□□□□ 0.04
RFC3P40938 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.28■□□□□ 0.04
RFC3P40938 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
RFC3P40938 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms