Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.3■□□□□ 0.2
HDAC3O15379 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.3■□□□□ 0.2
HDAC3O15379 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 AC079776.2-201ENST00000641154 1609 ntBASIC16.3■□□□□ 0.2
HDAC3O15379 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.3■□□□□ 0.2
HDAC3O15379 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.29■□□□□ 0.2
HDAC3O15379 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC3O15379 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
HDAC3O15379 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC3O15379 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.29■□□□□ 0.2
HDAC3O15379 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
HDAC3O15379 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC3O15379 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC3O15379 AC126177.1-201ENST00000547829 2218 ntBASIC16.29■□□□□ 0.2
HDAC3O15379 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.29■□□□□ 0.2
HDAC3O15379 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
HDAC3O15379 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC3O15379 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
HDAC3O15379 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.29■□□□□ 0.2
HDAC3O15379 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.29■□□□□ 0.2
HDAC3O15379 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC16.29■□□□□ 0.2
HDAC3O15379 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.29■□□□□ 0.2
HDAC3O15379 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.29■□□□□ 0.2
HDAC3O15379 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
HDAC3O15379 AC010331.1-201ENST00000611423 582 ntBASIC16.29■□□□□ 0.2
HDAC3O15379 AL590326.2-201ENST00000625139 305 ntBASIC16.29■□□□□ 0.2
HDAC3O15379 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.29■□□□□ 0.2
HDAC3O15379 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC3O15379 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC3O15379 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
HDAC3O15379 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.29■□□□□ 0.2
HDAC3O15379 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC3O15379 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC3O15379 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC3O15379 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC3O15379 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC3O15379 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
HDAC3O15379 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.29■□□□□ 0.2
HDAC3O15379 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC3O15379 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC3O15379 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC3O15379 AC068418.2-201ENST00000577309 3703 ntBASIC16.29■□□□□ 0.2
HDAC3O15379 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.29■□□□□ 0.2
HDAC3O15379 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.28■□□□□ 0.2
HDAC3O15379 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.28■□□□□ 0.2
HDAC3O15379 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
HDAC3O15379 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.28■□□□□ 0.2
HDAC3O15379 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
HDAC3O15379 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
HDAC3O15379 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.28■□□□□ 0.2
HDAC3O15379 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 IGHV3-47-201ENST00000425060 335 ntBASIC16.28■□□□□ 0.2
HDAC3O15379 ABCD1P5-201ENST00000445663 754 ntBASIC16.28■□□□□ 0.2
HDAC3O15379 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
HDAC3O15379 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.28■□□□□ 0.2
HDAC3O15379 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.28■□□□□ 0.2
HDAC3O15379 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.28■□□□□ 0.2
HDAC3O15379 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HDAC3O15379 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.28■□□□□ 0.2
HDAC3O15379 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.28■□□□□ 0.2
HDAC3O15379 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HDAC3O15379 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 KRT8P39-201ENST00000396270 1433 ntBASIC16.28■□□□□ 0.2
HDAC3O15379 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HDAC3O15379 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC3O15379 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC3O15379 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC3O15379 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC3O15379 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.27■□□□□ 0.2
HDAC3O15379 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC3O15379 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC3O15379 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
HDAC3O15379 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC3O15379 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC3O15379 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC3O15379 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms