Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
TM9SF3Q9HD45 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.71■□□□□ 0.26
TM9SF3Q9HD45 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
TM9SF3Q9HD45 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.71■□□□□ 0.26
TM9SF3Q9HD45 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
TM9SF3Q9HD45 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.71■□□□□ 0.26
TM9SF3Q9HD45 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
TM9SF3Q9HD45 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 AC107890.1-201ENST00000422478 521 ntBASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 AC125807.1-201ENST00000483097 614 ntBASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
TM9SF3Q9HD45 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 HCG4-201ENST00000418983 998 ntBASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 AC026150.2-201ENST00000564693 1156 ntBASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 AC239800.4-201ENST00000603712 296 ntBASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 WASH6P-202ENST00000359512 1437 ntBASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms