Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 KLF4P1-201ENST00000412782 1185 ntBASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 AC104076.2-201ENST00000448912 469 ntBASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 RN7SL606P-201ENST00000472779 293 ntBASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 PPOX-219ENST00000544598 813 ntTSL 2 BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 NDUFV2-AS1-203ENST00000608008 779 ntBASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CHMP1AQ9HD42 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 STX3-203ENST00000529177 1571 ntTSL 2 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 AL135999.2-201ENST00000622438 1686 ntBASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 AC003669.1-201ENST00000334569 611 ntBASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 DAP-202ENST00000432074 1048 ntTSL 2 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 AC009533.2-201ENST00000543664 586 ntBASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 AC005336.2-201ENST00000593183 939 ntBASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 AC009336.1-201ENST00000608941 1553 ntBASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 AC005052.1-201ENST00000625181 2492 ntBASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CHMP1AQ9HD42 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CHMP1AQ9HD42 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CHMP1AQ9HD42 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CHMP1AQ9HD42 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CHMP1AQ9HD42 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CHMP1AQ9HD42 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CHMP1AQ9HD42 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.46□□□□□ -0.09
CHMP1AQ9HD42 GPR89P-201ENST00000407924 1495 ntBASIC14.46□□□□□ -0.09
CHMP1AQ9HD42 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CHMP1AQ9HD42 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CHMP1AQ9HD42 MEG3-211ENST00000452514 461 ntTSL 3 BASIC14.46□□□□□ -0.09
CHMP1AQ9HD42 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
CHMP1AQ9HD42 KRT8P26-201ENST00000534154 1276 ntBASIC14.46□□□□□ -0.09
CHMP1AQ9HD42 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CHMP1AQ9HD42 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CHMP1AQ9HD42 RBM42-202ENST00000586618 771 ntTSL 3 BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms