Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.36■□□□□ 0.69
SHROOM1Q2M3G4 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHROOM1Q2M3G4 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.36■□□□□ 0.69
SHROOM1Q2M3G4 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHROOM1Q2M3G4 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SHROOM1Q2M3G4 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 FAM220BP-201ENST00000377689 816 ntBASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 MTND6P24-201ENST00000440466 518 ntBASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 AL133215.2-201ENST00000609242 977 ntBASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 AL844908.2-201ENST00000609461 460 ntBASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 TEX28P1-201ENST00000613479 1221 ntBASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 TEX28P2-201ENST00000617764 1221 ntBASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM1Q2M3G4 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 AL031731.1-201ENST00000642131 2094 ntBASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 AC005034.1-201ENST00000426657 489 ntBASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 AC012645.4-201ENST00000610691 1061 ntBASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 AC004790.1-201ENST00000612686 536 ntBASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 GPER1-207ENST00000619052 571 ntTSL 2 BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 AC022144.1-201ENST00000602255 1580 ntBASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 AP001094.4-201ENST00000579008 2176 ntBASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC19.34■□□□□ 0.69
SHROOM1Q2M3G4 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHROOM1Q2M3G4 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHROOM1Q2M3G4 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHROOM1Q2M3G4 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHROOM1Q2M3G4 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHROOM1Q2M3G4 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
SHROOM1Q2M3G4 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.33■□□□□ 0.69
SHROOM1Q2M3G4 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHROOM1Q2M3G4 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHROOM1Q2M3G4 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC19.33■□□□□ 0.69
SHROOM1Q2M3G4 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHROOM1Q2M3G4 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC19.33■□□□□ 0.69
SHROOM1Q2M3G4 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHROOM1Q2M3G4 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
SHROOM1Q2M3G4 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHROOM1Q2M3G4 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHROOM1Q2M3G4 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 CRB3P1-201ENST00000449338 276 ntBASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 AC009477.1-201ENST00000452936 217 ntBASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 RNA5SP410-201ENST00000516285 106 ntBASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 QPRT-203ENST00000562473 579 ntTSL 3 BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 RN7SL828P-201ENST00000607615 303 ntBASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHROOM1Q2M3G4 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms