Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC090164.3-201ENST00000610780 2143 ntBASIC19.39■□□□□ 0.69
SCN4AP35499 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN4AP35499 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC19.39■□□□□ 0.69
SCN4AP35499 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SCN4AP35499 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN4AP35499 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SCN4AP35499 INTS4P2-202ENST00000614726 2019 ntBASIC19.38■□□□□ 0.69
SCN4AP35499 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SCN4AP35499 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC19.38■□□□□ 0.69
SCN4AP35499 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC19.38■□□□□ 0.69
SCN4AP35499 HNRNPA1P13-201ENST00000510646 963 ntBASIC19.38■□□□□ 0.69
SCN4AP35499 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC19.38■□□□□ 0.69
SCN4AP35499 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC19.38■□□□□ 0.69
SCN4AP35499 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SCN4AP35499 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC19.38■□□□□ 0.69
SCN4AP35499 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN4AP35499 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN4AP35499 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN4AP35499 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN4AP35499 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SCN4AP35499 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SCN4AP35499 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.37■□□□□ 0.69
SCN4AP35499 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC19.37■□□□□ 0.69
SCN4AP35499 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC19.37■□□□□ 0.69
SCN4AP35499 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC19.37■□□□□ 0.69
SCN4AP35499 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SCN4AP35499 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SCN4AP35499 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC19.37■□□□□ 0.69
SCN4AP35499 AL049840.4-201ENST00000602422 811 ntBASIC19.37■□□□□ 0.69
SCN4AP35499 MIR6727-201ENST00000620702 65 ntBASIC19.37■□□□□ 0.69
SCN4AP35499 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SCN4AP35499 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SCN4AP35499 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SCN4AP35499 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SCN4AP35499 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SCN4AP35499 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC19.37■□□□□ 0.69
SCN4AP35499 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SCN4AP35499 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SCN4AP35499 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.37■□□□□ 0.69
SCN4AP35499 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SCN4AP35499 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC19.37■□□□□ 0.69
SCN4AP35499 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.37■□□□□ 0.69
SCN4AP35499 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC19.37■□□□□ 0.69
SCN4AP35499 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SCN4AP35499 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.37■□□□□ 0.69
SCN4AP35499 AC006277.1-201ENST00000624348 1610 ntBASIC19.37■□□□□ 0.69
SCN4AP35499 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SCN4AP35499 SOCS2P1-201ENST00000417727 557 ntBASIC19.37■□□□□ 0.69
SCN4AP35499 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SCN4AP35499 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SCN4AP35499 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SCN4AP35499 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC19.37■□□□□ 0.69
SCN4AP35499 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC19.37■□□□□ 0.69
SCN4AP35499 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC19.37■□□□□ 0.69
SCN4AP35499 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC19.37■□□□□ 0.69
SCN4AP35499 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
SCN4AP35499 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SCN4AP35499 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
SCN4AP35499 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
SCN4AP35499 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.36■□□□□ 0.69
SCN4AP35499 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SCN4AP35499 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC19.36■□□□□ 0.69
SCN4AP35499 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SCN4AP35499 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SCN4AP35499 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SCN4AP35499 FO393414.2-201ENST00000405153 598 ntBASIC19.36■□□□□ 0.69
SCN4AP35499 HARS-202ENST00000415192 1401 ntTSL 2 BASIC19.36■□□□□ 0.69
SCN4AP35499 AC012441.1-201ENST00000446669 685 ntBASIC19.36■□□□□ 0.69
SCN4AP35499 AP001889.1-201ENST00000525414 633 ntBASIC19.36■□□□□ 0.69
SCN4AP35499 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC19.36■□□□□ 0.69
SCN4AP35499 FOS-206ENST00000555347 1280 ntTSL 2 BASIC19.36■□□□□ 0.69
SCN4AP35499 AC020765.3-201ENST00000613051 740 ntBASIC19.36■□□□□ 0.69
SCN4AP35499 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SCN4AP35499 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SCN4AP35499 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
SCN4AP35499 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
SCN4AP35499 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SCN4AP35499 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SCN4AP35499 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.36■□□□□ 0.69
SCN4AP35499 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC19.36■□□□□ 0.69
SCN4AP35499 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SCN4AP35499 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SCN4AP35499 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SCN4AP35499 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SCN4AP35499 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SCN4AP35499 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC19.35■□□□□ 0.69
SCN4AP35499 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
SCN4AP35499 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SCN4AP35499 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC19.35■□□□□ 0.69
SCN4AP35499 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SCN4AP35499 AC007969.1-201ENST00000433675 447 ntBASIC19.35■□□□□ 0.69
SCN4AP35499 AC016694.1-201ENST00000434179 700 ntBASIC19.35■□□□□ 0.69
SCN4AP35499 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC19.35■□□□□ 0.69
SCN4AP35499 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SCN4AP35499 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC19.35■□□□□ 0.69
SCN4AP35499 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC19.35■□□□□ 0.69
SCN4AP35499 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC19.35■□□□□ 0.69
SCN4AP35499 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC19.35■□□□□ 0.69
SCN4AP35499 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SCN4AP35499 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms